| |
+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6NBI'
8 similar queries.
Duplicated 2 times.
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2.88
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(235)
structure = Structure.objects.get(pdb_code__index=pdbname.upper())
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| |
+
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 23
2 similar queries.
Duplicated 2 times.
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0.54
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(238)
if len(complex_mod_details) > 0:
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+
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 23 ORDER BY "signprot_complex"."id" ASC LIMIT 1
|
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0.51
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(239)
complex_mod = complex_mod_details.first()
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55564
26 similar queries.
Duplicated 5 times.
|
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2.15
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|
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
|
| |
+
|
SELECT ••• "structure_complex_model"."id", "structure_complex_model"."receptor_protein_id", "structure_complex_model"."sign_protein_id", "structure_complex_model"."main_template_id", "structure_complex_model"."pdb_data_id", "structure_complex_model"."version", "structure_complex_model"."stats_text_id" FROM "structure_complex_model" INNER JOIN "protein" ON ("structure_complex_model"."receptor_protein_id" = "protein"."id") INNER JOIN "protein" T3 ON ("structure_complex_model"."sign_protein_id" = T3."id") WHERE ("protein"."entry_name" = '6nbi' AND T3."entry_name" = 'gnas2_bovin')
|
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2.80
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(258)
model = StructureComplexModel.objects.get(receptor_protein__entry_name=modelname, sign_protein__entry_name=signprot)
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" WHERE "structure"."id" = 23
|
|
0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(259)
main_template = model.main_template
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 54922
26 similar queries.
Duplicated 3 times.
|
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0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(260)
if model.receptor_protein.accession:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 300
26 similar queries.
Duplicated 5 times.
|
|
0.34
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(272)
receptor_residues = Residue.objects.filter(protein_conformation__protein=model.receptor_protein.parent)
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55564
26 similar queries.
Duplicated 5 times.
|
|
0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(273)
signprot_residues = Residue.objects.filter(protein_conformation__protein=model.sign_protein)
|
| |
+
|
SELECT ••• "stats_text"."id", "stats_text"."stats_text" FROM "stats_text" WHERE "stats_text"."id" = 1325
|
|
4.19
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
|
| |
+
|
SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_conformation" ON ("residue"."protein_conformation_id" = "protein_conformation"."id") WHERE "protein_conformation"."protein_id" = 300 ORDER BY "residue"."sequence_number" ASC
2 similar queries.
|
|
9.26
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(306)
receptor_residues_dict = {r.sequence_number:r for r in receptor_residues}
|
| |
+
|
SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_conformation" ON ("residue"."protein_conformation_id" = "protein_conformation"."id") WHERE "protein_conformation"."protein_id" = 55564 ORDER BY "residue"."sequence_number" ASC
2 similar queries.
|
|
6.81
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(307)
if signprot_residues:
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6NBI'
8 similar queries.
Duplicated 2 times.
|
|
1.48
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
|
| |
+
|
SELECT ••• "protein_segment"."slug" FROM "protein_segment" WHERE "protein_segment"."proteinfamily" = 'Alpha' ORDER BY "protein_segment"."id" ASC
|
|
0.54
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(342)
if signprot_residues and segment in alpha_segments:
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6FJ3'
8 similar queries.
|
|
1.63
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(335)
rotamer_struct = Structure.objects.get(pdb_code__index=rotamer_pdb)
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+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6NBF'
8 similar queries.
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1.41
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(335)
rotamer_struct = Structure.objects.get(pdb_code__index=rotamer_pdb)
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+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '4L6R'
8 similar queries.
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1.23
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6X18'
8 similar queries.
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1.23
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6WZG'
8 similar queries.
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1.23
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '7MBX'
8 similar queries.
|
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1.21
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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+
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 23
2 similar queries.
Duplicated 2 times.
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0.33
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(280)
signprot_template = SignprotComplex.objects.get(structure=main_template).protein
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55564
26 similar queries.
Duplicated 5 times.
|
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0.36
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(280)
signprot_template = SignprotComplex.objects.get(structure=main_template).protein
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+
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SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 54922
8 similar queries.
Duplicated 2 times.
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1.76
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 54922
26 similar queries.
Duplicated 3 times.
|
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0.39
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|
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 300
26 similar queries.
Duplicated 5 times.
|
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0.29
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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+
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SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55360
8 similar queries.
|
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0.34
|
|
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55360
26 similar queries.
|
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1.20
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
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+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 300
26 similar queries.
Duplicated 5 times.
|
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0.34
|
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 54930
8 similar queries.
|
|
0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 54930
26 similar queries.
|
|
0.36
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 300
26 similar queries.
Duplicated 5 times.
|
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0.34
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55113
8 similar queries.
|
|
1.22
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55113
26 similar queries.
|
|
0.36
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 298
26 similar queries.
|
|
0.33
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59157
8 similar queries.
Duplicated 2 times.
|
|
0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59470
8 similar queries.
|
|
0.38
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59949
8 similar queries.
|
|
0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55087
8 similar queries.
|
|
1.16
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55087
26 similar queries.
|
|
1.20
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 296
26 similar queries.
|
|
0.34
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55267
8 similar queries.
|
|
0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55267
26 similar queries.
|
|
1.19
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 299
26 similar queries.
|
|
0.28
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55170
8 similar queries.
|
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1.40
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55170
26 similar queries.
|
|
1.48
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 45
26 similar queries.
|
|
0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59911
8 similar queries.
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59404
8 similar queries.
|
|
0.24
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 60023
8 similar queries.
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name" FROM "residue_generic_numbering_scheme" WHERE "residue_generic_numbering_scheme"."slug" = 'gpcrdb'
|
|
0.52
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(286)
gp = GProteinAlignment()
/home/protwis/gpcrdb_test/common/alignment.py in __init__(1832)
super(GProteinAlignment, self).__init__()
/home/protwis/gpcrdb_test/common/alignment.py in __init__(55)
self.default_numbering_scheme = ResidueNumberingScheme.objects.get(slug=settings.DEFAULT_NUMBERING_SCHEME)
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."protein_id" = 55564
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1838)
self.load_reference_protein(reference_protein)
/home/protwis/gpcrdb_test/common/alignment.py in load_reference_protein(117)
pconf = ProteinConformation.objects.get(protein=protein)
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55564
26 similar queries.
Duplicated 5 times.
|
|
0.28
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1838)
self.load_reference_protein(reference_protein)
/home/protwis/gpcrdb_test/common/alignment.py in load_reference_protein(123)
self.update_numbering_schemes()
/home/protwis/gpcrdb_test/common/alignment.py in update_numbering_schemes(298)
if pc.protein.residue_numbering_scheme.slug not in self.numbering_schemes:
|
| |
+
|
SELECT ••• "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name" FROM "residue_generic_numbering_scheme" WHERE "residue_generic_numbering_scheme"."id" = 15
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1838)
self.load_reference_protein(reference_protein)
/home/protwis/gpcrdb_test/common/alignment.py in load_reference_protein(123)
self.update_numbering_schemes()
/home/protwis/gpcrdb_test/common/alignment.py in update_numbering_schemes(298)
if pc.protein.residue_numbering_scheme.slug not in self.numbering_schemes:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id", "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence", "species"."id", "species"."latin_name", "species"."common_name", "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name", "protein_state"."id", "protein_state"."slug", "protein_state"."name" FROM "protein_conformation" INNER JOIN "protein" ON ("protein_conformation"."protein_id" = "protein"."id") INNER JOIN "species" ON ("protein"."species_id" = "species"."id") LEFT OUTER JOIN "residue_generic_numbering_scheme" ON ("protein"."residue_numbering_scheme_id" = "residue_generic_numbering_scheme"."id") INNER JOIN "protein_state" ON ("protein_conformation"."state_id" = "protein_state"."id") INNER JOIN "protein_family" ON ("protein"."family_id" = "protein_family"."id") WHERE "protein_conformation"."protein_id" IN (55564) ORDER BY "protein_family"."slug" ASC, "protein"."entry_name" ASC
|
|
1.97
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1839)
self.load_proteins([template_protein])
/home/protwis/gpcrdb_test/common/alignment.py in load_proteins(140)
for pconf in protein_conformations:
|
| |
+
|
SELECT ••• "protein_segment"."id", "protein_segment"."slug", "protein_segment"."name", "protein_segment"."category", "protein_segment"."fully_aligned", "protein_segment"."partial", "protein_segment"."proteinfamily" FROM "protein_segment" WHERE "protein_segment"."proteinfamily" = 'Alpha' ORDER BY "protein_segment"."id" ASC
|
|
0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1844)
self.load_segments(gprotein_segments)
/home/protwis/gpcrdb_test/common/alignment.py in load_segments(195)
for s in selected_segments:
|
| |
+
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SELECT ••• "residue_generic_number"."id", "residue_generic_number"."scheme_id", "residue_generic_number"."protein_segment_id", "residue_generic_number"."label", "protein_segment"."id", "protein_segment"."slug", "protein_segment"."name", "protein_segment"."category", "protein_segment"."fully_aligned", "protein_segment"."partial", "protein_segment"."proteinfamily" FROM "residue_generic_number" INNER JOIN "protein_segment" ON ("residue_generic_number"."protein_segment_id" = "protein_segment"."id") WHERE ("residue_generic_number"."protein_segment_id" IN (22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58) AND "residue_generic_number"."scheme_id" = 1) ORDER BY "residue_generic_number"."label" ASC
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1.12
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1844)
self.load_segments(gprotein_segments)
/home/protwis/gpcrdb_test/common/alignment.py in load_segments(209)
for segment_residue in segment_positions:
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+
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SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_segment" ON ("residue"."protein_segment_id" = "protein_segment"."id") WHERE ("residue"."protein_conformation_id" IN (55547) AND "protein_segment"."slug" IN ('HN', 'hns1', 'S1', 's1h1', 'H1', 'h1ha', 'HA', 'hahb', 'HB', 'hbhc', 'HC', 'hchd', 'HD', 'hdhe', 'HE', 'hehf', 'HF', 'hfs2', 'S2', 's2s3', 'S3', 's3h2', 'H2', 'h2s4', 'S4', 's4h3', 'H3', 'h3s5', 'S5', 's5hg', 'HG', 'hgh4', 'H4', 'h4s6', 'S6', 's6h5', 'H5')) ORDER BY "residue"."sequence_number" ASC
2 similar queries.
Duplicated 2 times.
|
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1.11
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(334)
self.number_of_residues_total = len(rs)
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+
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SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_segment" ON ("residue"."protein_segment_id" = "protein_segment"."id") WHERE ("residue"."protein_conformation_id" IN (55547) AND "protein_segment"."slug" IN ('HN', 'hns1', 'S1', 's1h1', 'H1', 'h1ha', 'HA', 'hahb', 'HB', 'hbhc', 'HC', 'hchd', 'HD', 'hdhe', 'HE', 'hehf', 'HF', 'hfs2', 'S2', 's2s3', 'S3', 's3h2', 'H2', 'h2s4', 'S4', 's4h3', 'H3', 'h3s5', 'S5', 's5hg', 'HG', 'hgh4', 'H4', 'h4s6', 'S6', 's6h5', 'H5')) ORDER BY "residue"."sequence_number" ASC
2 similar queries.
Duplicated 2 times.
|
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0.95
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
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+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" IN (55547) ORDER BY "protein_conformation"."id" ASC
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" IN (55564)
|
|
0.28
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
|
| |
+
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SELECT ••• "protein_state"."id", "protein_state"."slug", "protein_state"."name" FROM "protein_state" WHERE "protein_state"."id" IN (3)
|
|
0.25
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
|
| |
+
|
SELECT ••• "protein_segment"."id", "protein_segment"."slug", "protein_segment"."name", "protein_segment"."category", "protein_segment"."fully_aligned", "protein_segment"."partial", "protein_segment"."proteinfamily" FROM "protein_segment" WHERE "protein_segment"."id" IN (22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58) ORDER BY "protein_segment"."id" ASC
|
|
0.39
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
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| |
+
|
SELECT ••• "residue_generic_number"."id", "residue_generic_number"."scheme_id", "residue_generic_number"."protein_segment_id", "residue_generic_number"."label" FROM "residue_generic_number" WHERE "residue_generic_number"."id" IN (104624, 104625, 104626, 104627, 104628, 104629, 104630, 104631, 104632, 104633, 104634, 104635, 104636, 104637, 104638, 104639, 104640, 104641, 104642, 104643, 104644, 104645, 104646, 104647, 104648, 104649, 104650, 104651, 104652, 104653, 104654, 104655, 104656, 104657, 104658, 104659, 104660, 104661, 104662, 104663, 104664, 104665, 104666, 104667, 104668, 104669, 104670, 104671, 104672, 104673, 104674, 104675, 104676, 104677, 104678, 104679, 104680, 104681, 104682, 104683, 104684, 104685, 104686, 104687, 104688, 104689, 104690, 104691, 104692, 104693, 104694, 104695, 104696, 104697, 104698, 104699, 104700, 104701, 104702, 104703, 104704, 104705, 104706, 104707, 104708, 104709, 104710, 104711, 104712, 104713, 104714, 104715, 104716, 104717, 104718, 104719, 104720, 104721, 104722, 104723, 104724, 104725, 104726, 104727, 104728, 104729, 104730, 104731, 104732, 104733, 104734, 104735, 104736, 104737, 104738, 104739, 104740, 104741, 104742, 104743, 104744, 104745, 104746, 104747, 104748, 104749, 104750, 104751, 104752, 104753, 104754, 104755, 104756, 104757, 104758, 104759, 104760, 104761, 104762, 104763, 104764, 104765, 104766, 104767, 104768, 104769, 104770, 104771, 104772, 104773, 104774, 104775, 104776, 104777, 104778, 104779, 104780, 104781, 104782, 104783, 104784, 104785, 104786, 104787, 104788, 104789, 104790, 104791, 104792, 104793, 104794, 104795, 104796, 104797, 104798, 104799, 104800, 104801, 104802, 104803, 104804, 104805, 104806, 104807, 104808, 104809, 104810, 104811, 104812, 104813, 104814, 104815, 104816, 104817, 104818, 104819, 104820, 104821, 104822, 104823, 104824, 104825, 104826, 104827, 104828, 104829, 104830, 104831, 104832, 104833, 104834, 104835, 104836, 104837, 104838, 104839, 104840, 104841, 104842, 104843, 104844, 104845, 104846, 104847, 104848, 104849, 104850, 104851, 104852, 104853, 104854, 104855, 104856, 104857, 104858, 104859, 104860, 104861, 104862, 104863, 104864, 104865, 104866, 104867, 104868, 104869, 104870, 104871, 104872, 104873, 104874, 104875, 104876, 104877, 104878, 104879, 104880, 104881, 104882, 104883, 104884, 104885, 104886, 104887, 104888, 104889, 104890, 104891, 104892, 104893, 104894, 104895, 104896, 104897, 104898, 104899, 104900, 104901, 104902, 104903, 104904, 104905, 104906, 104907, 104908, 104909, 104910, 104911, 104912, 104913, 104914, 104915, 104916, 104917, 104918, 104919, 104920, 104921, 104922, 104923, 104924, 104925, 104926, 104927, 104928, 104929, 104930, 104931, 104932, 104933, 104934, 104935, 104936, 104937, 104938, 104939, 104940, 104941, 104942, 104943, 104944, 104945, 104946, 104947, 104948, 104949, 104950, 104951, 104952, 104953, 104954, 104955, 104956, 104957, 104958, 104959, 104960, 104961, 104962, 104963, 104964, 104965, 104966, 104967, 104968, 104969, 104970, 104971, 104972, 104973, 104974, 104975, 104976, 104977, 104978, 104979, 104980, 104981, 104982, 104983, 104984, 104985, 104986, 104987, 104988, 104989, 104990, 104991, 104992, 104993, 104994, 104995, 104996, 104997, 104998, 104999, 105000, 105001, 105002, 105003, 105004, 105005, 105006, 105007, 105008, 105009, 105010, 105011, 105012, 105013, 105014, 105015, 105016, 105017)
2 similar queries.
Duplicated 2 times.
|
|
1.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
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| |
+
|
SELECT ••• "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name" FROM "residue_generic_numbering_scheme" WHERE "residue_generic_numbering_scheme"."id" IN (15)
2 similar queries.
Duplicated 2 times.
|
|
0.26
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
|
| |
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SELECT ••• "residue_generic_number"."id", "residue_generic_number"."scheme_id", "residue_generic_number"."protein_segment_id", "residue_generic_number"."label" FROM "residue_generic_number" WHERE "residue_generic_number"."id" IN (104624, 104625, 104626, 104627, 104628, 104629, 104630, 104631, 104632, 104633, 104634, 104635, 104636, 104637, 104638, 104639, 104640, 104641, 104642, 104643, 104644, 104645, 104646, 104647, 104648, 104649, 104650, 104651, 104652, 104653, 104654, 104655, 104656, 104657, 104658, 104659, 104660, 104661, 104662, 104663, 104664, 104665, 104666, 104667, 104668, 104669, 104670, 104671, 104672, 104673, 104674, 104675, 104676, 104677, 104678, 104679, 104680, 104681, 104682, 104683, 104684, 104685, 104686, 104687, 104688, 104689, 104690, 104691, 104692, 104693, 104694, 104695, 104696, 104697, 104698, 104699, 104700, 104701, 104702, 104703, 104704, 104705, 104706, 104707, 104708, 104709, 104710, 104711, 104712, 104713, 104714, 104715, 104716, 104717, 104718, 104719, 104720, 104721, 104722, 104723, 104724, 104725, 104726, 104727, 104728, 104729, 104730, 104731, 104732, 104733, 104734, 104735, 104736, 104737, 104738, 104739, 104740, 104741, 104742, 104743, 104744, 104745, 104746, 104747, 104748, 104749, 104750, 104751, 104752, 104753, 104754, 104755, 104756, 104757, 104758, 104759, 104760, 104761, 104762, 104763, 104764, 104765, 104766, 104767, 104768, 104769, 104770, 104771, 104772, 104773, 104774, 104775, 104776, 104777, 104778, 104779, 104780, 104781, 104782, 104783, 104784, 104785, 104786, 104787, 104788, 104789, 104790, 104791, 104792, 104793, 104794, 104795, 104796, 104797, 104798, 104799, 104800, 104801, 104802, 104803, 104804, 104805, 104806, 104807, 104808, 104809, 104810, 104811, 104812, 104813, 104814, 104815, 104816, 104817, 104818, 104819, 104820, 104821, 104822, 104823, 104824, 104825, 104826, 104827, 104828, 104829, 104830, 104831, 104832, 104833, 104834, 104835, 104836, 104837, 104838, 104839, 104840, 104841, 104842, 104843, 104844, 104845, 104846, 104847, 104848, 104849, 104850, 104851, 104852, 104853, 104854, 104855, 104856, 104857, 104858, 104859, 104860, 104861, 104862, 104863, 104864, 104865, 104866, 104867, 104868, 104869, 104870, 104871, 104872, 104873, 104874, 104875, 104876, 104877, 104878, 104879, 104880, 104881, 104882, 104883, 104884, 104885, 104886, 104887, 104888, 104889, 104890, 104891, 104892, 104893, 104894, 104895, 104896, 104897, 104898, 104899, 104900, 104901, 104902, 104903, 104904, 104905, 104906, 104907, 104908, 104909, 104910, 104911, 104912, 104913, 104914, 104915, 104916, 104917, 104918, 104919, 104920, 104921, 104922, 104923, 104924, 104925, 104926, 104927, 104928, 104929, 104930, 104931, 104932, 104933, 104934, 104935, 104936, 104937, 104938, 104939, 104940, 104941, 104942, 104943, 104944, 104945, 104946, 104947, 104948, 104949, 104950, 104951, 104952, 104953, 104954, 104955, 104956, 104957, 104958, 104959, 104960, 104961, 104962, 104963, 104964, 104965, 104966, 104967, 104968, 104969, 104970, 104971, 104972, 104973, 104974, 104975, 104976, 104977, 104978, 104979, 104980, 104981, 104982, 104983, 104984, 104985, 104986, 104987, 104988, 104989, 104990, 104991, 104992, 104993, 104994, 104995, 104996, 104997, 104998, 104999, 105000, 105001, 105002, 105003, 105004, 105005, 105006, 105007, 105008, 105009, 105010, 105011, 105012, 105013, 105014, 105015, 105016, 105017)
2 similar queries.
Duplicated 2 times.
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1.28
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1845)
self.build_alignment()
/home/protwis/gpcrdb_test/common/alignment.py in build_alignment(382)
for r in rs:
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SELECT ••• "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name" FROM "residue_generic_numbering_scheme" WHERE "residue_generic_numbering_scheme"."id" IN (15)
2 similar queries.
Duplicated 2 times.
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0.24
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