| |
+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6XBL'
11 similar queries.
Duplicated 2 times.
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2.78
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(235)
structure = Structure.objects.get(pdb_code__index=pdbname.upper())
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+
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 294
2 similar queries.
Duplicated 2 times.
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0.58
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(238)
if len(complex_mod_details) > 0:
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+
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 294 ORDER BY "signprot_complex"."id" ASC LIMIT 1
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0.50
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(239)
complex_mod = complex_mod_details.first()
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55549
31 similar queries.
Duplicated 7 times.
|
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0.99
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|
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
|
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+
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SELECT ••• "structure_complex_model"."id", "structure_complex_model"."receptor_protein_id", "structure_complex_model"."sign_protein_id", "structure_complex_model"."main_template_id", "structure_complex_model"."pdb_data_id", "structure_complex_model"."version", "structure_complex_model"."stats_text_id" FROM "structure_complex_model" INNER JOIN "protein" ON ("structure_complex_model"."receptor_protein_id" = "protein"."id") INNER JOIN "protein" T3 ON ("structure_complex_model"."sign_protein_id" = T3."id") WHERE ("protein"."entry_name" = '6xbl' AND T3."entry_name" = 'gnai1_human')
|
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1.19
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(258)
model = StructureComplexModel.objects.get(receptor_protein__entry_name=modelname, sign_protein__entry_name=signprot)
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" WHERE "structure"."id" = 294
|
|
0.37
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(259)
main_template = model.main_template
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55039
31 similar queries.
Duplicated 3 times.
|
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0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(260)
if model.receptor_protein.accession:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
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0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(272)
receptor_residues = Residue.objects.filter(protein_conformation__protein=model.receptor_protein.parent)
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55549
31 similar queries.
Duplicated 7 times.
|
|
0.29
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(273)
signprot_residues = Residue.objects.filter(protein_conformation__protein=model.sign_protein)
|
| |
+
|
SELECT ••• "stats_text"."id", "stats_text"."stats_text" FROM "stats_text" WHERE "stats_text"."id" = 1361
|
|
2.02
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
|
| |
+
|
SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_conformation" ON ("residue"."protein_conformation_id" = "protein_conformation"."id") WHERE "protein_conformation"."protein_id" = 371 ORDER BY "residue"."sequence_number" ASC
2 similar queries.
|
|
1.88
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(306)
receptor_residues_dict = {r.sequence_number:r for r in receptor_residues}
|
| |
+
|
SELECT ••• "residue"."id", "residue"."protein_conformation_id", "residue"."protein_segment_id", "residue"."generic_number_id", "residue"."display_generic_number_id", "residue"."sequence_number", "residue"."amino_acid" FROM "residue" INNER JOIN "protein_conformation" ON ("residue"."protein_conformation_id" = "protein_conformation"."id") WHERE "protein_conformation"."protein_id" = 55549 ORDER BY "residue"."sequence_number" ASC
2 similar queries.
|
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0.86
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(307)
if signprot_residues:
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6XBL'
11 similar queries.
Duplicated 2 times.
|
|
1.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
|
| |
+
|
SELECT ••• "protein_segment"."slug" FROM "protein_segment" WHERE "protein_segment"."proteinfamily" = 'Alpha' ORDER BY "protein_segment"."id" ASC
|
|
0.51
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(342)
if signprot_residues and segment in alpha_segments:
|
| |
+
|
SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '4N4W'
11 similar queries.
|
|
1.29
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6O3C'
11 similar queries.
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1.28
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6XBM'
11 similar queries.
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1.25
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '5V56'
11 similar queries.
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1.25
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(335)
rotamer_struct = Structure.objects.get(pdb_code__index=rotamer_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6OT0'
11 similar queries.
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1.23
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(335)
rotamer_struct = Structure.objects.get(pdb_code__index=rotamer_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '4QIM'
11 similar queries.
|
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1.22
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '5V57'
11 similar queries.
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1.18
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(335)
rotamer_struct = Structure.objects.get(pdb_code__index=rotamer_pdb)
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+
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '6PT0'
11 similar queries.
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1.18
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "structure"."id", "structure"."protein_conformation_id", "structure"."structure_type_id", "structure"."pdb_code_id", "structure"."state_id", "structure"."author_state_id", "structure"."publication_id", "structure"."preferred_chain", "structure"."resolution", "structure"."publication_date", "structure"."pdb_data_id", "structure"."representative", "structure"."distance_representative", "structure"."contact_representative", "structure"."contact_representative_score", "structure"."inactive_class_contacts_fraction", "structure"."active_class_contacts_fraction", "structure"."class_contact_representative", "structure"."annotated", "structure"."refined", "structure"."distance", "structure"."tm6_angle", "structure"."gprot_bound_likeness", "structure"."sodium", "structure"."signprot_complex_id", "structure"."stats_text_id", "structure"."mammal", "structure"."closest_to_human" FROM "structure" INNER JOIN "web_link" ON ("structure"."pdb_code_id" = "web_link"."id") WHERE "web_link"."index" = '7JVR'
11 similar queries.
|
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1.19
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(275)
receptor_rotamers, signprot_rotamers = parse_model_statsfile(model.stats_text.stats_text, receptor_residues, signprot_residues)
/home/protwis/gpcrdb_test/structure/views.py in parse_model_statsfile(327)
backbone_struct = Structure.objects.get(pdb_code__index=backbone_pdb)
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SELECT ••• "signprot_complex"."id", "signprot_complex"."protein_id", "signprot_complex"."structure_id", "signprot_complex"."alpha", "signprot_complex"."beta_chain", "signprot_complex"."beta_protein_id", "signprot_complex"."gamma_chain", "signprot_complex"."gamma_protein_id" FROM "signprot_complex" WHERE "signprot_complex"."structure_id" = 294
2 similar queries.
Duplicated 2 times.
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0.30
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(280)
signprot_template = SignprotComplex.objects.get(structure=main_template).protein
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55549
31 similar queries.
Duplicated 7 times.
|
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0.31
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(280)
signprot_template = SignprotComplex.objects.get(structure=main_template).protein
|
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+
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SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55039
11 similar queries.
Duplicated 2 times.
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0.30
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55039
31 similar queries.
Duplicated 3 times.
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0.30
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
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0.31
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55408
11 similar queries.
|
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0.31
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55408
31 similar queries.
|
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0.33
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
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0.32
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55280
11 similar queries.
|
|
0.29
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55280
31 similar queries.
|
|
0.32
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 971
31 similar queries.
|
|
0.34
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55436
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55436
31 similar queries.
|
|
0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
|
0.29
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55156
11 similar queries.
|
|
0.28
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55156
31 similar queries.
|
|
0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
|
0.33
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55248
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55248
31 similar queries.
|
|
0.29
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|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
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0.29
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55106
11 similar queries.
|
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0.27
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55106
31 similar queries.
|
|
0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
|
0.33
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 54944
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 54944
31 similar queries.
|
|
0.35
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 371
31 similar queries.
Duplicated 9 times.
|
|
0.28
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(371)
if r.rotamer_template.protein_conformation.protein.parent not in r_temps:
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59843
11 similar queries.
Duplicated 2 times.
|
|
0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 60324
11 similar queries.
|
|
0.26
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59504
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59937
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 60166
11 similar queries.
|
|
0.26
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(281)
bb_temps, backbone_templates, r_temps, rotamer_templates, segments_out, bb_main, bb_alt, bb_none, sc_main, sc_alt, sc_none, template_list, colors = format_model_details(receptor_rotamers, main_template, color_palette, chain='R')
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55188
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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+
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SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55188
31 similar queries.
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0.34
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 164
31 similar queries.
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0.31
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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+
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SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."id" = 55325
11 similar queries.
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0.28
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Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55325
31 similar queries.
|
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0.32
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
|
| |
+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 28
31 similar queries.
|
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0.30
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(365)
if r.backbone_template.protein_conformation.protein.parent not in bb_temps:
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+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59342
11 similar queries.
|
|
0.27
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
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| |
+
|
SELECT ••• "web_link"."id", "web_link"."web_resource_id", "web_link"."index" FROM "web_link" WHERE "web_link"."id" = 59445
11 similar queries.
|
|
0.29
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(284)
bb_temps2, backbone_templates2, r_temps2, rotamer_templates2, segments_out2, bb_main2, bb_alt2, bb_none2, sc_main2, sc_alt2, sc_none2, template_list2, colors2 = format_model_details(signprot_rotamers, main_template, signprot_color_palette, chain='A', used_colors=colors)
/home/protwis/gpcrdb_test/structure/views.py in format_model_details(448)
template_list.append(t.pdb_code.index)
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+
|
SELECT ••• "residue_generic_numbering_scheme"."id", "residue_generic_numbering_scheme"."parent_id", "residue_generic_numbering_scheme"."slug", "residue_generic_numbering_scheme"."short_name", "residue_generic_numbering_scheme"."name" FROM "residue_generic_numbering_scheme" WHERE "residue_generic_numbering_scheme"."slug" = 'gpcrdb'
|
|
0.54
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(286)
gp = GProteinAlignment()
/home/protwis/gpcrdb_test/common/alignment.py in __init__(1832)
super(GProteinAlignment, self).__init__()
/home/protwis/gpcrdb_test/common/alignment.py in __init__(55)
self.default_numbering_scheme = ResidueNumberingScheme.objects.get(slug=settings.DEFAULT_NUMBERING_SCHEME)
|
| |
+
|
SELECT ••• "protein_conformation"."id", "protein_conformation"."protein_id", "protein_conformation"."state_id" FROM "protein_conformation" WHERE "protein_conformation"."protein_id" = 55549
|
|
0.26
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.lower(), complex_mod.protein.entry_name)
/home/protwis/gpcrdb_test/structure/views.py in ComplexModelDetails(287)
gp.run_alignment(model.sign_protein, signprot_template, calculate_similarity=True)
/home/protwis/gpcrdb_test/common/alignment.py in run_alignment(1838)
self.load_reference_protein(reference_protein)
/home/protwis/gpcrdb_test/common/alignment.py in load_reference_protein(117)
pconf = ProteinConformation.objects.get(protein=protein)
|
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+
|
SELECT ••• "protein"."id", "protein"."parent_id", "protein"."family_id", "protein"."species_id", "protein"."source_id", "protein"."residue_numbering_scheme_id", "protein"."sequence_type_id", "protein"."entry_name", "protein"."accession", "protein"."name", "protein"."sequence" FROM "protein" WHERE "protein"."id" = 55549
31 similar queries.
Duplicated 7 times.
|
|
0.31
|
|
|
Connection: default
/usr/lib/python3.6/concurrent/futures/thread.py in _worker(69)
work_item.run()
/usr/lib/python3.6/concurrent/futures/thread.py in run(56)
result = self.fn(*self.args, **self.kwargs)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle(279)
keepalive = self.handle_request(req, conn)
/home/protwis/gpcrdb_env/lib/python3.6/site-packages/gunicorn/workers/gthread.py in handle_request(328)
respiter = self.wsgi(environ, resp.start_response)
/home/protwis/gpcrdb_test/common/middleware/stats.py in __call__(34)
response = self.get_response(request)
/home/protwis/gpcrdb_test/structure/views.py in RefinedModelDetails(240)
return ComplexModelDetails(request, pdbname.l |