Structure information

S1P1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

3V2Y

SPECIES

Homo sapiens

RESOLUTION

2.800

PREFERRED CHAIN

A

REFERENCE

10.1126/SCIENCE.1215904

PUBLICATION DATE

Feb. 15, 2012

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
W146 Y29 N-term polar (hydrogen bond)
W146 Y29 N-term Van der Waals
W146 K34 N-term polar (charge-assisted hydrogen bond)
W146 N101 2.60x60 TM2 polar (hydrogen bond)
W146 S105 2.64x64 TM2 Van der Waals
W146 R120 3.28x28 TM3 polar (charge-assisted hydrogen bond)
W146 E121 3.29x29 TM3 polar (charge-assisted hydrogen bond)
W146 M124 3.32x32 TM3 hydrophobic
W146 M124 3.32x32 TM3 Van der Waals
W146 F125 3.33x33 TM3 hydrophobic
W146 F125 3.33x33 TM3 Van der Waals
W146 L128 3.36x36 TM3 Van der Waals
W146 L128 3.36x36 TM3 hydrophobic
W146 V194 ECL2 Van der Waals
W146 V194 ECL2 polar (hydrogen bond with backbone)
W146 C206 5.43x43 TM5 Van der Waals
W146 W269 6.48x48 TM6 Van der Waals
W146 W269 6.48x48 TM6 hydrophobic
W146 L276 6.55x55 TM6 hydrophobic
W146 L276 6.55x55 TM6 Van der Waals
W146 E294 7.36x35 TM7 Van der Waals
W146 L297 7.39x38 TM7 hydrophobic
W146 L297 7.39x38 TM7 Van der Waals

Ligands

W146

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Residue Diagrams

I N E L I I F C C I L I F V V S T L K I 1 G N L A L S D L L A G V A Y T A N L L L 2 A L L S F V S A S L A V F M S G E R L F 3 L F L L I S A C W V I S L I L G G L P I 4 Y L I V I S L L L L T F V T T C F L I Y 5 I I V L S V F I A C W A P L F I L L L L 6 I P N T G S N L V A L V L F Y E A R F 7
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ICL1 K K F H ICL1ECL1 G A T T Y K L ECL1ICL2 M K L H N G S ICL2ECL2 W N C I S A L S S C S T V L P L Y ECL2ICL3 F R K N I S K A ICL3ECL3 K V K T C ECL3N-term M G P T S V P L V K A H R S S V S D Y V N Y D I I V R H Y N Y T G K L N I S A D K N-termC-term C C K C P S G D S A G K F K R P I I A G M E F S R S K S D N S S H P Q K D E G D N P E T I M S S G N V N S S S C-term E N S I K L T S V V F I L I C C F I I L E N I F V L L T I W K T R P M Y Y F I G N L A L S D L L A G V A Y T A N L L L S T P A Q W F L R E G S M F V A L S A S V F S L L A I A I E R Y I T M L K N N F R L F L L I S A C W V I S L I L G G L P I M G H K H Y I L F C T T V F T L L L L S I V I L Y C R I Y S L V R T R S R R L T S R S S E K S L A L L K T V I I V L S V F I A C W A P L F I L L L L D V G C D I L F R A E Y F L V L A V L N S G T N P I I Y T L T N K E F I R M R R A I M S
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Residue Table


GPCRdb(A)
GPCRdb(A)
S1P1 receptor
TM2
2x60 2.60x60 N101
2x64 2.64x64 S105
TM3
3x28 3.28x28 R120
3x29 3.29x29 E121
3x32 3.32x32 M124
3x33 3.33x33 F125
3x36 3.36x36 L128
TM5
5x43 5.43x43 C206
TM6
6x48 6.48x48 W269
6x55 6.55x55 L276
TM7
7x35 7.36x35 E294
7x38 7.39x38 L297