Structure information

NOP receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5DHG

SPECIES

Homo sapiens

RESOLUTION

3.000

PREFERRED CHAIN

A

REFERENCE

10.1016/J.STR.2015.07.024

PUBLICATION DATE

Oct. 21, 2015

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL1783826 Q107 2.60x60 TM2 polar (hydrogen bond)
CHEMBL1783826 D110 2.63x63 TM2 Van der Waals
CHEMBL1783826 W116 23.50x50 ECL1 hydrophobic
CHEMBL1783826 W116 23.50x50 ECL1 Van der Waals
CHEMBL1783826 I127 3.29x29 TM3 Van der Waals
CHEMBL1783826 I127 3.29x29 TM3 hydrophobic
CHEMBL1783826 D130 3.32x32 TM3 polar (charge-assisted hydrogen bond)
CHEMBL1783826 Y131 3.33x33 TM3 Van der Waals
CHEMBL1783826 Y131 3.33x33 TM3 hydrophobic
CHEMBL1783826 M134 3.36x36 TM3 Van der Waals
CHEMBL1783826 M134 3.36x36 TM3 hydrophobic
CHEMBL1783826 C200 45.50x50 ECL2 Van der Waals
CHEMBL1783826 I219 5.42x43 TM5 hydrophobic
CHEMBL1783826 I219 5.42x43 TM5 Van der Waals
CHEMBL1783826 S223 5.46x461 TM5 Van der Waals
CHEMBL1783826 V279 6.51x51 TM6 Van der Waals
CHEMBL1783826 V279 6.51x51 TM6 hydrophobic
CHEMBL1783826 Q280 6.52x52 TM6 Van der Waals
CHEMBL1783826 V283 6.55x55 TM6 hydrophobic
CHEMBL1783826 Y309 7.43x42 TM7 Van der Waals

Ligands

CHEMBL1783826

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Residue Diagrams

C N G L L G G V C V A L Y L G V I T V K 1 F N L A L A D T L V L L T L P F Q G T D 2 A T L T F T S T F M N Y Y D I A I V T K 3 A Q A V N V A I W A L A S V V G V P V A 4 Y C V S I V L V P V I F S F L F I C I A F 5 L V V V A V F V G C W T P V Q V F V L A 6 I P N L C S N V Y G L A T C F R L I A 7
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ICL1 T K M K ICL1ECL1 F W P F ECL1ICL2 P I R A L D V R ICL2ECL2 S A Q V E D E E I E C L V E I P T ECL2ICL3 R L L S G ICL3ECL3 V Q P S ECL3N-term M E P L F P A P F W E V I Y G S H L Q G N L S L L S P N H S L L P P H L L L N A S H G A F L P N-termC-term A S A L R R D V Q V S D R V R S I A K D V A L A C K T S E T V P R P A C-term L G L K V T I V G L Y L A V C V G G L L G N C L V M Y V I L R H T A T N I Y I F N L A L A D T L V L L T L P F Q G T D I L L G G N A L C K T V I A I D Y Y N M F T S T F T L T A M S V D R Y V A I C H T S S K A Q A V N V A I W A L A S V V G V P V A I M G P Q D Y W G P V F A I C I F L F S F I V P V L V I S V C Y S L M I R R L R G V S R E K D R N L R R I T R L V L V V V A V F V G C W T P V Q V F V L A Q G L G S E T A V A I L R F C T A L G Y V N S C L N P I L Y A F L D E N F R K F K A C F C C
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Residue Table


GPCRdb(A)
GPCRdb(A)
NOP receptor
TM2
2x60 2.60x60 Q107
2x63 2.63x63 D110
ECL1
23x50 23.50x50 W116
TM3
3x29 3.29x29 I127
3x32 3.32x32 D130
3x33 3.33x33 Y131
3x36 3.36x36 M134
ECL2
45x50 45.50x50 C200
TM5
5x43 5.42x43 I219
5x461 5.46x461 S223
TM6
6x51 6.51x51 V279
6x52 6.52x52 Q280
6x55 6.55x55 V283
TM7
7x42 7.43x42 Y309