CCR6 - Go

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

6WWZ

RESOLUTION

3.3 Å

REFERENCE

10.1038/S41467-020-16820-6

PUBLICATION DATE

June 24, 2020

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

59 interactions (Click to see)

LIGANDS

CCL20 - Agonist gtoplig

PHYSIOLOGICAL LIGANDS

beta-defensin 4A, CCL20



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 R 157 - G.hns1 A 31 G.hns1.02
Hydrophobic ICL3 Q 245 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 Q 245 - G.S6 Y 320 G.S6.02
Hydrophobic TM2 T 81 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM6 I 256 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 241 5x65 G.H5 L 348 G.H5.20
Hydrophobic ICL2 A 150 34x50 G.H5 I 343 G.H5.15
Polar ICL2 R 155 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic ICL2 R 155 34x55 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 R 155 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic TM6 A 252 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM3 I 147 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 147 3x54 G.H5 L 348 G.H5.20
Polar ICL3 S 247 - G.h4s6 E 318 G.h4s6.12
Van-der-waals TM7 I 319 7x56 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 F 154 34x54 G.S1 D 33 G.S1.01
Hydrophobic TM3 R 143 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 143 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 143 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 R 157 - G.hns1 K 32 G.hns1.03
Polar H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Hydrophobic H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Aromatic TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Polar ICL3 Q 245 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 Q 245 - G.H5 D 341 G.H5.13
Polar H8 G 320 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 G 320 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM3 A 146 3x53 G.H5 C 351 G.H5.23
Polar TM3 A 146 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 146 3x53 G.H5 N 347 G.H5.19
Van-der-waals ICL3 N 246 - G.H5 A 345 G.H5.17
Hydrophobic TM6 A 252 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM2 T 81 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 T 81 2x39 G.H5 G 350 G.H5.22
Hydrophobic ICL2 R 155 34x55 G.S3 L 195 G.S3.01
Hydrophobic ICL2 F 154 34x54 G.S1 V 34 G.S1.02
Hydrophobic ICL2 A 150 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL3 K 248 - G.H5 Y 354 G.H5.26
Van-der-waals ICL3 K 248 - G.H5 Y 354 G.H5.26
Polar ICL3 K 248 - G.H5 A 345 G.H5.17