D1 receptor - Gs

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

2.9 Å

REFERENCE

PUBLICATION DATE

Feb. 24, 2021

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

LIGANDS

39YLC3L0ZU - Agonist pubchem

ENDOGENOUS LIGANDS

5-hydroxytryptamine, noradrenaline, dopamine, (-)-noradrenaline, L-NOREPINEPHRINE



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic TM6 K 269 6x32 G.H5 L 393 G.H5.25
Van-der-waals TM6 K 269 6x32 G.H5 L 393 G.H5.25
Hydrophobic TM5 K 239 5x83 G.H4 R 347 G.H4.17
Van-der-waals TM5 K 239 5x83 G.H4 R 347 G.H4.17
Hydrophobic TM5 A 221 5x65 G.H5 L 388 G.H5.20
Hydrophobic TM5 L 231 5x75 G.H4 L 346 G.H4.16
Van-der-waals TM5 L 231 5x75 G.H4 L 346 G.H4.16
Hydrophobic ICL2 P 128 34x50 G.H5 I 383 G.H5.15
Van-der-waals ICL2 P 128 34x50 G.H5 I 383 G.H5.15
Hydrophobic TM5 E 232 5x76 G.h4s6 T 350 G.h4s6.03
Polar TM3 A 124 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM3 A 124 3x53 G.H5 H 387 G.H5.19
Van-der-waals TM3 A 124 3x53 G.H5 H 387 G.H5.19
Polar TM5 A 238 5x82 G.H4 R 347 G.H4.17
Hydrophobic TM5 A 238 5x82 G.H4 R 347 G.H4.17
Van-der-waals TM5 A 238 5x82 G.H4 R 347 G.H4.17
Hydrophobic TM5 A 234 5x78 G.H4 L 346 G.H4.16
Polar H8 N 334 8x47 G.H5 Q 390 G.H5.22
Hydrophobic ICL2 F 129 34x51 G.H5 C 379 G.H5.11
Van-der-waals ICL2 F 129 34x51 G.H5 C 379 G.H5.11
Hydrophobic TM3 I 125 3x54 G.H5 L 388 G.H5.20
Hydrophobic ICL2 F 129 34x51 G.S3 F 219 G.S3.03
Polar TM5 Q 224 5x68 G.H5 Q 384 G.H5.16
Van-der-waals TM5 Q 224 5x68 G.H5 Q 384 G.H5.16
Hydrophobic TM5 I 217 5x61 G.H5 L 393 G.H5.25
Polar TM6 T 273 6x36 G.H5 E 392 G.H5.24
Hydrophobic TM5 Q 224 5x68 G.H5 L 388 G.H5.20
Aromatic ICL2 F 129 34x51 G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 129 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 129 34x51 G.H5 F 376 G.H5.08
Hydrophobic TM5 A 235 5x79 G.h4s6 T 350 G.h4s6.03
Hydrophobic ICL2 Y 131 34x53 G.H5 H 387 G.H5.19
Hydrophobic TM2 T 59 2x39 G.H5 Y 391 G.H5.23
Van-der-waals TM2 T 59 2x39 G.H5 Y 391 G.H5.23
Polar TM3 S 126 3x55 G.H5 Q 384 G.H5.16
Van-der-waals TM3 S 126 3x55 G.H5 Q 384 G.H5.16
Hydrophobic TM3 R 121 3x50 G.H5 Y 391 G.H5.23
Van-der-waals TM3 R 121 3x50 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 P 128 34x50 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 P 128 34x50 G.H5 H 387 G.H5.19
Polar TM3 S 127 3x56 G.H5 R 380 G.H5.12
Hydrophobic ICL2 F 129 34x51 G.H5 R 380 G.H5.12
Van-der-waals ICL2 F 129 34x51 G.H5 R 380 G.H5.12
Hydrophobic TM5 I 228 5x72 G.H5 L 394 G.H5.26
Hydrophobic TM5 L 231 5x75 G.S6 P 361 G.S6.03
Aromatic ICL2 F 129 34x51 G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 129 34x51 G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 129 34x51 G.S1 H 41 G.S1.02
Ionic ICL2 E 132 34x54 G.S1 H 41 G.S1.02
Polar ICL2 E 132 34x54 G.S1 H 41 G.S1.02
Hydrophobic ICL2 E 132 34x54 G.S1 H 41 G.S1.02
Van-der-waals ICL2 E 132 34x54 G.S1 H 41 G.S1.02
Ionic H8 R 338 8x51 G.H5 E 392 G.H5.24
Polar H8 R 338 8x51 G.H5 E 392 G.H5.24
Polar TM3 S 126 3x55 G.H5 R 380 G.H5.12
Van-der-waals TM3 S 126 3x55 G.H5 R 380 G.H5.12
Hydrophobic TM5 A 234 5x78 G.H4 D 343 G.H4.13
Van-der-waals TM5 A 234 5x78 G.H4 D 343 G.H4.13
Van-der-waals TM7 F 333 7x55 G.H5 E 392 G.H5.24
Hydrophobic ICL2 F 129 34x51 G.H5 I 383 G.H5.15
Van-der-waals ICL2 F 129 34x51 G.H5 I 383 G.H5.15
Hydrophobic TM5 A 235 5x79 G.H4 R 347 G.H4.17
Hydrophobic TM5 A 238 5x82 G.H4 D 343 G.H4.13
Van-der-waals TM5 A 238 5x82 G.H4 D 343 G.H4.13
Hydrophobic TM3 I 125 3x54 G.H5 H 387 G.H5.19
Polar TM3 I 125 3x54 G.H5 Q 384 G.H5.16
Hydrophobic TM3 I 125 3x54 G.H5 Q 384 G.H5.16
Van-der-waals TM3 I 125 3x54 G.H5 Q 384 G.H5.16
Polar ICL2 R 133 34x55 G.s2s3 K 216 G.s2s3.02
Van-der-waals ICL2 R 133 34x55 G.s2s3 K 216 G.s2s3.02
Hydrophobic TM5 R 227 5x71 G.S6 Y 360 G.S6.02
Hydrophobic ICL2 P 128 34x50 G.H5 R 380 G.H5.12
Van-der-waals ICL2 P 128 34x50 G.H5 R 380 G.H5.12
Hydrophobic TM5 K 239 5x83 G.h4s6 A 351 G.h4s6.04
Hydrophobic TM5 I 228 5x72 G.h4s6 Y 358 G.h4s6.20
Van-der-waals TM5 I 228 5x72 G.h4s6 Y 358 G.h4s6.20
Hydrophobic ICL2 R 133 34x55 G.hns1 A 39 G.hns1.03
Hydrophobic TM6 R 266 6x29 G.H5 L 394 G.H5.26
Polar TM6 V 270 6x33 G.H5 L 393 G.H5.25
Hydrophobic TM6 V 270 6x33 G.H5 L 393 G.H5.25
Van-der-waals TM6 V 270 6x33 G.H5 L 393 G.H5.25
Hydrophobic ICL2 F 129 34x51 G.S3 V 217 G.S3.01
Van-der-waals ICL2 F 129 34x51 G.S3 V 217 G.S3.01
Hydrophobic TM6 K 269 6x32 G.H5 E 392 G.H5.24
Van-der-waals TM6 K 269 6x32 G.H5 E 392 G.H5.24
Hydrophobic TM6 L 274 6x37 G.H5 L 393 G.H5.25
Hydrophobic TM5 A 235 5x79 G.H4 L 346 G.H4.16
Hydrophobic TM5 I 228 5x72 G.H5 R 385 G.H5.17
Van-der-waals TM5 I 228 5x72 G.H5 R 385 G.H5.17
Hydrophobic TM5 I 225 5x69 G.H5 L 394 G.H5.26
Polar TM5 Q 224 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM5 Q 224 5x68 G.H5 R 385 G.H5.17
Van-der-waals TM5 Q 224 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM3 I 125 3x54 G.H5 Y 391 G.H5.23
Hydrophobic TM5 A 238 5x82 G.hgh4 Y 318 G.hgh4.08
Ionic TM5 R 227 5x71 G.H5 D 381 G.H5.13
Polar TM5 R 227 5x71 G.H5 D 381 G.H5.13
Hydrophobic TM5 R 227 5x71 G.H5 D 381 G.H5.13
Van-der-waals TM5 R 227 5x71 G.H5 D 381 G.H5.13
Polar TM6 K 269 6x32 G.H5 L 394 G.H5.26
Hydrophobic TM6 K 269 6x32 G.H5 L 394 G.H5.26
Van-der-waals TM6 K 269 6x32 G.H5 L 394 G.H5.26
Hydrophobic TM5 A 221 5x65 G.H5 L 393 G.H5.25