CCR1 - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

7VL9

RESOLUTION

2.6 Å

REFERENCE

10.1038/S41589-021-00918-Z

PUBLICATION DATE

March 23, 2022

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

93 interactions (Click to see)

LIGANDS

CCL15(26-92) - Agonist

PHYSIOLOGICAL LIGANDS

CCL7, CCL4, CCL14, CCL23, CCL3, CCL5, CCL16, CCL13, CCL8, CCL15



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM2 T 69 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM5 I 225 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM6 L 240 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 226 5x65 G.H5 L 353 G.H5.25
Hydrophobic TM3 A 134 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 134 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 142 34x54 G.H5 I 343 G.H5.15
Hydrophobic TM3 I 135 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 135 3x54 G.H5 L 348 G.H5.20
Polar TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 131 3x50 G.H5 C 351 G.H5.23
Aromatic TM6 K 233 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 233 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 233 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM3 R 131 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 131 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 135 3x54 G.H5 N 347 G.H5.19
Polar H8 G 305 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 G 305 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 G 305 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 R 307 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 R 307 8x49 G.H5 K 349 G.H5.21
Hydrophobic ICL2 A 138 34x50 G.H5 I 343 G.H5.15
Polar ICL2 L 142 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 L 142 34x54 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 L 142 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 A 237 6x33 G.H5 L 353 G.H5.25
Ionic H8 R 307 8x49 G.H5 D 350 G.H5.22
Polar H8 R 307 8x49 G.H5 D 350 G.H5.22
Hydrophobic H8 R 307 8x49 G.H5 D 350 G.H5.22
Hydrophobic ICL2 V 139 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 V 139 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM3 I 135 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 A 138 34x50 G.H5 I 344 G.H5.16
Polar ICL2 R 145 34x57 G.H5 N 347 G.H5.19
Hydrophobic H8 G 305 8x47 G.H5 F 354 G.H5.26
Van-der-waals TM4 T 146 4x38 G.hns1 R 32 G.hns1.03
Polar H8 E 306 8x48 G.H5 F 354 G.H5.26
Hydrophobic H8 E 306 8x48 G.H5 F 354 G.H5.26
Van-der-waals H8 E 306 8x48 G.H5 F 354 G.H5.26
Hydrophobic TM6 I 241 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 237 6x33 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 234 6x30 G.H5 F 354 G.H5.26
Hydrophobic TM5 L 226 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM5 I 222 5x61 G.H5 L 353 G.H5.25
Ionic ICL3 R 229 - G.H5 D 341 G.H5.13
Polar ICL3 R 229 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 R 229 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 R 229 - G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 142 34x54 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 142 34x54 G.S3 L 194 G.S3.01
Ionic ICL2 R 145 34x57 G.H5 D 350 G.H5.22
Hydrophobic TM6 K 234 6x30 G.H5 L 348 G.H5.20
Polar TM3 A 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 134 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 134 3x53 G.H5 N 347 G.H5.19