FP receptor - Gq

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gq/11

G PROTEIN SPECIES

Homo sapiens

PDB CODE

8IUK

RESOLUTION

2.7 Å

REFERENCE

10.1038/S41467-023-38411-X

PUBLICATION DATE

July 12, 2023

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

47 interactions (Click to see)

LIGANDS

PGF2α - Agonist pubchem gtoplig chembl_ligand drug_central drugbank

PHYSIOLOGICAL LIGANDS

thromboxane A2, PGD2, PGE2, PGI2, PGF2α



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 M 247 6x33 G.H5 Y 356 G.H5.23
Van-der-waals TM6 M 247 6x33 G.H5 Y 356 G.H5.23
Hydrophobic TM5 L 227 5x63 G.H5 L 353 G.H5.20
Hydrophobic ICL2 T 145 34x55 G.hns1 R 38 G.hns1.03
Van-der-waals ICL2 T 145 34x55 G.hns1 R 38 G.hns1.03
Hydrophobic TM1 I 50 1x56 G.H5 L 358 G.H5.25
Polar TM3 T 138 3x55 G.H5 K 345 G.H5.12
Polar TM6 E 246 6x32 G.H5 N 357 G.H5.24
Hydrophobic TM6 E 246 6x32 G.H5 N 357 G.H5.24
Van-der-waals TM6 E 246 6x32 G.H5 N 357 G.H5.24
Polar TM2 A 64 2x37 G.H5 E 355 G.H5.22
Hydrophobic TM2 A 64 2x37 G.H5 E 355 G.H5.22
Van-der-waals TM2 A 64 2x37 G.H5 E 355 G.H5.22
Hydrophobic ICL2 I 141 34x51 G.S3 V 194 G.S3.01
Van-der-waals ICL2 I 141 34x51 G.S3 V 194 G.S3.01
Hydrophobic TM1 F 58 1x64 G.H5 L 358 G.H5.25
Hydrophobic ICL1 S 62 - G.H5 M 351 G.H5.18
Hydrophobic TM1 F 58 1x64 G.H5 R 354 G.H5.21
Hydrophobic ICL2 I 141 34x51 G.H5 K 345 G.H5.12
Van-der-waals ICL2 I 141 34x51 G.H5 K 345 G.H5.12
Hydrophobic TM6 M 247 6x33 G.H5 L 353 G.H5.20
Hydrophobic TM1 A 54 1x60 G.H5 L 358 G.H5.25
Hydrophobic TM2 L 67 2x40 G.H5 L 358 G.H5.25
Hydrophobic H8 V 311 8x50 G.H5 L 358 G.H5.25
Polar TM2 F 66 2x39 G.H5 E 355 G.H5.22
Hydrophobic TM2 F 66 2x39 G.H5 E 355 G.H5.22
Hydrophobic ICL2 P 140 34x50 G.H5 K 345 G.H5.12
Van-der-waals ICL2 P 140 34x50 G.H5 K 345 G.H5.12
Hydrophobic TM6 H 244 6x30 G.H5 L 353 G.H5.20
Van-der-waals TM6 H 244 6x30 G.H5 L 353 G.H5.20
Polar TM1 R 57 1x63 G.H5 V 359 G.H5.26
Hydrophobic TM1 R 57 1x63 G.H5 V 359 G.H5.26
Van-der-waals TM1 R 57 1x63 G.H5 V 359 G.H5.26
Hydrophobic TM2 F 66 2x39 G.H5 L 358 G.H5.25
Polar ICL3 H 243 - G.H5 N 357 G.H5.24
Hydrophobic ICL3 H 243 - G.H5 N 357 G.H5.24
Van-der-waals ICL3 H 243 - G.H5 N 357 G.H5.24
Aromatic TM3 R 133 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM3 R 133 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 R 133 3x50 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 I 141 34x51 G.H5 F 341 G.H5.08
Van-der-waals ICL1 Q 60 - G.h2s4 D 217 G.h2s4.03
Hydrophobic TM3 V 137 3x54 G.H5 L 349 G.H5.16
Polar ICL1 K 61 - G.h3s5 T 251 G.h3s5.02
Hydrophobic ICL1 K 61 - G.h3s5 T 251 G.h3s5.02
Van-der-waals ICL1 K 61 - G.h3s5 T 251 G.h3s5.02
Hydrophobic ICL2 T 145 34x55 G.S1 L 40 G.S1.02
Hydrophobic ICL2 S 144 34x54 G.H5 I 348 G.H5.15
Hydrophobic ICL2 P 140 34x50 G.H5 I 348 G.H5.15
Van-der-waals ICL2 P 140 34x50 G.H5 I 348 G.H5.15
Hydrophobic ICL1 K 63 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL1 K 63 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL3 H 243 - G.H5 L 353 G.H5.20
Hydrophobic TM1 F 58 1x64 G.H5 E 355 G.H5.22
Hydrophobic TM6 M 247 6x33 G.H5 N 357 G.H5.24
Van-der-waals TM6 M 247 6x33 G.H5 N 357 G.H5.24
Polar ICL1 S 62 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL1 S 62 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL1 S 62 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL3 H 243 - G.H5 R 354 G.H5.21
Van-der-waals ICL3 H 243 - G.H5 R 354 G.H5.21
Polar TM4 K 150 4x40 G.HN Q 34 G.HN.52
Hydrophobic TM4 K 150 4x40 G.HN Q 34 G.HN.52
Van-der-waals TM4 K 150 4x40 G.HN Q 34 G.HN.52
Polar TM6 H 244 6x30 G.H5 Q 350 G.H5.17
Hydrophobic TM6 H 244 6x30 G.H5 Q 350 G.H5.17
Van-der-waals TM6 H 244 6x30 G.H5 Q 350 G.H5.17
Polar TM3 G 136 3x53 G.H5 N 352 G.H5.19
Polar TM2 S 65 2x38 G.H5 E 355 G.H5.22
Hydrophobic ICL1 K 61 - G.h2s4 D 217 G.h2s4.03
Polar TM1 R 57 1x63 G.H5 L 358 G.H5.25
Hydrophobic ICL2 P 140 34x50 G.H5 L 349 G.H5.16
Hydrophobic TM4 T 148 4x38 G.HN Q 34 G.HN.52
Van-der-waals TM4 T 148 4x38 G.HN Q 34 G.HN.52
Hydrophobic TM1 L 51 1x57 G.H5 L 358 G.H5.25
Aromatic TM2 F 66 2x39 G.H5 Y 356 G.H5.23
Hydrophobic TM2 F 66 2x39 G.H5 Y 356 G.H5.23
Van-der-waals TM2 F 66 2x39 G.H5 Y 356 G.H5.23
Hydrophobic TM1 F 58 1x64 G.H5 V 359 G.H5.26
Van-der-waals TM1 F 58 1x64 G.H5 V 359 G.H5.26
Polar ICL1 S 62 - G.H5 E 355 G.H5.22
Van-der-waals ICL1 S 62 - G.H5 E 355 G.H5.22
Hydrophobic ICL3 H 243 - G.H5 V 359 G.H5.26
Van-der-waals ICL3 H 243 - G.H5 V 359 G.H5.26
Polar TM3 E 132 3x49 G.H5 Y 356 G.H5.23
Van-der-waals TM3 E 132 3x49 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 I 141 34x51 G.H5 I 348 G.H5.15