Go - ADGRE2 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 88.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM7 Y 778 7x57 G.H5 G 352 G.H5.24
Polar H8 Q 783 8x48 G.h4s6 N 316 G.h4s6.10
Van-der-waals H8 Q 783 8x48 G.h4s6 N 316 G.h4s6.10
Polar H8 E 787 8x52 G.h4s6 N 316 G.h4s6.10
Hydrophobic H8 E 787 8x52 G.h4s6 N 316 G.h4s6.10
Van-der-waals H8 E 787 8x52 G.h4s6 N 316 G.h4s6.10
Polar ICL2 L 631 - G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 631 - G.H5 N 347 G.H5.19
Van-der-waals ICL2 L 631 - G.H5 N 347 G.H5.19
Polar ICL2 N 635 - G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 N 635 - G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 N 635 - G.hns1 A 31 G.hns1.02
Hydrophobic TM5 L 714 5x65 G.H5 I 344 G.H5.16
Polar ICL3 L 724 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 L 724 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 L 724 - G.H5 D 341 G.H5.13
Hydrophobic H8 E 787 8x52 G.h4s6 P 315 G.h4s6.09
Van-der-waals H8 E 787 8x52 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM3 L 624 3x54 G.H5 C 351 G.H5.23
Hydrophobic TM5 L 710 5x61 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 710 5x61 G.H5 L 348 G.H5.20
Polar ICL2 V 633 - G.H5 N 347 G.H5.19
Van-der-waals ICL2 V 633 - G.H5 N 347 G.H5.19
Polar ICL3 S 722 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 S 722 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 S 722 - G.H5 D 341 G.H5.13
Hydrophobic TM6 L 730 6x38 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 730 6x38 G.H5 L 353 G.H5.25
Hydrophobic TM3 Y 623 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM6 A 734 6x42 G.H5 L 353 G.H5.25
Polar H8 Q 783 8x48 G.h4s6 P 315 G.h4s6.09
Hydrophobic H8 Q 783 8x48 G.h4s6 P 315 G.h4s6.09
Van-der-waals H8 Q 783 8x48 G.h4s6 P 315 G.h4s6.09
Polar TM3 N 630 3x60 G.H5 N 347 G.H5.19
Hydrophobic H8 Q 784 8x49 G.h4s6 N 316 G.h4s6.10
Hydrophobic ICL3 V 721 - G.H5 A 338 G.H5.10
Hydrophobic ICL3 V 721 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 V 721 - G.H5 V 334 G.H5.06
Hydrophobic ICL2 V 633 - G.H5 I 343 G.H5.15
Van-der-waals ICL2 V 633 - G.H5 I 343 G.H5.15
Hydrophobic ICL2 V 634 - G.S1 D 33 G.S1.01
Polar ICL2 V 634 - G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 V 634 - G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 V 634 - G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 T 632 - G.H5 I 343 G.H5.15
Van-der-waals ICL2 T 632 - G.H5 I 343 G.H5.15
Hydrophobic ICL3 V 721 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 V 721 - G.S6 Y 320 G.S6.02
Hydrophobic TM6 L 730 6x38 G.H5 L 348 G.H5.20
Van-der-waals TM6 L 730 6x38 G.H5 L 348 G.H5.20
Polar ICL3 T 723 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 T 723 - G.H5 D 341 G.H5.13
Hydrophobic H8 Q 784 8x49 G.H5 R 349 G.H5.21
Van-der-waals H8 Q 784 8x49 G.H5 R 349 G.H5.21
Hydrophobic ICL2 L 631 - G.H5 L 348 G.H5.20
Hydrophobic TM3 T 627 3x57 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 631 - G.H5 I 343 G.H5.15
Hydrophobic ICL3 L 724 - G.H5 I 344 G.H5.16
Hydrophobic TM5 L 717 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 L 717 5x68 G.H5 I 344 G.H5.16
Polar TM2 N 566 2x44 G.H5 G 350 G.H5.22
Van-der-waals TM2 N 566 2x44 G.H5 G 350 G.H5.22
Hydrophobic ICL2 Y 636 - G.H5 N 347 G.H5.19
Polar ICL3 T 723 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 T 723 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 L 717 5x68 G.H5 T 340 G.H5.12
Hydrophobic ICL2 V 633 - G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 V 633 - G.hns1 A 31 G.hns1.02
Polar TM2 S 568 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM2 S 568 2x46 G.H5 G 350 G.H5.22
Van-der-waals TM2 S 568 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM3 L 624 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL2 V 634 - G.H5 I 343 G.H5.15
Van-der-waals ICL2 V 634 - G.H5 I 343 G.H5.15
Polar ICL2 R 641 - G.HN L 23 G.HN.47
Ionic TM4 K 645 4x44 G.HN E 20 G.HN.44
Polar TM2 S 568 2x46 G.H5 C 351 G.H5.23
Hydrophobic TM2 S 568 2x46 G.H5 C 351 G.H5.23
Van-der-waals TM2 S 568 2x46 G.H5 C 351 G.H5.23
Polar ICL2 L 631 - G.H5 I 344 G.H5.16
Hydrophobic ICL2 L 631 - G.H5 I 344 G.H5.16
Hydrophobic ICL2 T 632 - G.H5 T 340 G.H5.12
Hydrophobic ICL2 V 634 - G.S1 V 34 G.S1.02
Van-der-waals ICL2 V 634 - G.S1 V 34 G.S1.02
Hydrophobic TM3 T 627 3x57 G.H5 C 351 G.H5.23
Polar ICL2 N 635 - G.hns1 A 30 G.hns1.01
Hydrophobic ICL2 N 635 - G.hns1 A 30 G.hns1.01
Van-der-waals ICL2 N 635 - G.hns1 A 30 G.hns1.01
Hydrophobic ICL3 L 724 - G.H5 A 345 G.H5.17
Hydrophobic TM6 K 733 6x41 G.H5 L 353 G.H5.25
Van-der-waals TM6 K 733 6x41 G.H5 L 353 G.H5.25
Polar TM6 K 733 6x41 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 733 6x41 G.H5 Y 354 G.H5.26
Hydrophobic TM6 Q 737 6x45 G.H5 L 353 G.H5.25
Polar TM6 K 733 6x41 G.H5 G 352 G.H5.24
Hydrophobic ICL3 L 724 - G.H5 Y 354 G.H5.26
Van-der-waals ICL3 L 724 - G.H5 Y 354 G.H5.26
Polar ICL3 T 723 - G.S6 Y 320 G.S6.02
Hydrophobic ICL3 T 723 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 T 723 - G.S6 Y 320 G.S6.02
Hydrophobic ICL2 T 632 - G.H5 I 344 G.H5.16
Polar ICL3 N 718 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 N 718 - G.H5 D 337 G.H5.09
Van-der-waals ICL3 N 718 - G.H5 D 337 G.H5.09