Gi1 - ADGRG7 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 L 555 3x58 G.H5 L 348 G.H5.20
Van-der-waals TM3 L 555 3x58 G.H5 L 348 G.H5.20
Hydrophobic ICL3 S 660 - G.S6 Y 320 G.S6.02
Hydrophobic ICL3 K 662 - G.h4s6 E 318 G.h4s6.12
Polar TM3 L 554 3x57 G.H5 N 347 G.H5.19
Hydrophobic TM3 L 554 3x57 G.H5 N 347 G.H5.19
Van-der-waals TM3 L 554 3x57 G.H5 N 347 G.H5.19
Hydrophobic TM3 L 554 3x57 G.H5 C 351 G.H5.23
Van-der-waals TM3 L 554 3x57 G.H5 C 351 G.H5.23
Hydrophobic TM5 N 657 5x68 G.H5 F 334 G.H5.06
Van-der-waals TM5 N 657 5x68 G.H5 F 334 G.H5.06
Hydrophobic ICL2 P 561 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 P 561 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL3 T 661 - G.H4 E 308 G.H4.16
Van-der-waals ICL3 T 661 - G.H4 E 308 G.H4.16
Polar TM7 R 723 7x60 G.H5 F 354 G.H5.26
Van-der-waals ICL1 K 461 12x49 G.HN R 24 G.HN.48
Hydrophobic ICL1 R 463 12x51 G.H5 D 350 G.H5.22
Van-der-waals ICL1 R 463 12x51 G.H5 D 350 G.H5.22
Ionic ICL2 K 560 - G.s2s3 D 193 G.s2s3.02
Polar ICL2 K 560 - G.s2s3 D 193 G.s2s3.02
Hydrophobic ICL2 K 560 - G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 K 560 - G.s2s3 D 193 G.s2s3.02
Hydrophobic TM2 V 467 2x46 G.H5 D 350 G.H5.22
Van-der-waals ICL3 S 660 - G.S6 I 319 G.S6.01
Hydrophobic TM7 Y 720 7x57 G.H5 L 353 G.H5.25
Hydrophobic C-term M 759 - G.H2 I 212 G.H2.08
Van-der-waals C-term M 759 - G.H2 I 212 G.H2.08
Aromatic TM6 K 668 6x37 G.H5 F 354 G.H5.26
Polar TM5 N 657 5x68 G.S6 H 322 G.S6.04
Hydrophobic TM5 N 657 5x68 G.S6 H 322 G.S6.04
Van-der-waals TM5 N 657 5x68 G.S6 H 322 G.S6.04
Hydrophobic ICL2 M 559 - G.S3 L 194 G.S3.01
Van-der-waals ICL2 M 559 - G.S3 L 194 G.S3.01
Hydrophobic ICL3 T 659 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 T 659 - G.S6 Y 320 G.S6.02
Hydrophobic TM5 V 650 5x61 G.H5 L 348 G.H5.20
Polar TM6 S 672 6x41 G.H5 L 353 G.H5.25
Hydrophobic TM6 S 672 6x41 G.H5 L 353 G.H5.25
Van-der-waals TM6 S 672 6x41 G.H5 L 353 G.H5.25
Polar ICL1 K 464 - G.H5 N 347 G.H5.19
Van-der-waals ICL1 K 464 - G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 562 - G.HN E 28 G.HN.52
Van-der-waals ICL2 L 562 - G.HN E 28 G.HN.52
Hydrophobic ICL3 V 664 - G.H5 F 354 G.H5.26
Polar TM7 R 723 7x60 G.H5 L 353 G.H5.25
Ionic ICL1 K 464 - G.H5 D 350 G.H5.22
Hydrophobic ICL1 K 464 - G.H5 D 350 G.H5.22
Van-der-waals ICL1 K 464 - G.H5 D 350 G.H5.22
Hydrophobic TM6 V 676 6x45 G.H5 L 353 G.H5.25
Hydrophobic ICL2 T 558 - G.H5 I 344 G.H5.16
Van-der-waals ICL2 T 558 - G.H5 I 344 G.H5.16
Polar TM2 T 465 2x44 G.HN R 24 G.HN.48
Van-der-waals TM2 T 465 2x44 G.HN R 24 G.HN.48
Hydrophobic TM5 V 650 5x61 G.H5 I 344 G.H5.16
Van-der-waals TM5 V 650 5x61 G.H5 I 344 G.H5.16
Hydrophobic TM3 L 555 3x58 G.H5 I 344 G.H5.16
Hydrophobic ICL2 M 559 - G.H5 T 340 G.H5.12
Van-der-waals ICL2 M 559 - G.H5 T 340 G.H5.12
Hydrophobic ICL3 L 658 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 L 658 - G.H5 D 341 G.H5.13
Hydrophobic TM6 S 675 6x44 G.H5 L 353 G.H5.25
Van-der-waals TM6 S 675 6x44 G.H5 L 353 G.H5.25
Hydrophobic ICL2 M 559 - G.H5 F 336 G.H5.08
Hydrophobic TM3 L 551 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL3 L 658 - G.S6 H 322 G.S6.04
Van-der-waals ICL3 L 658 - G.S6 H 322 G.S6.04
Hydrophobic ICL3 L 658 - G.H5 D 337 G.H5.09
Van-der-waals ICL3 L 658 - G.H5 D 337 G.H5.09
Hydrophobic TM7 Y 720 7x57 G.H5 C 351 G.H5.23
Van-der-waals TM7 Y 720 7x57 G.H5 C 351 G.H5.23
Polar TM2 S 466 2x45 G.HN E 28 G.HN.52
Van-der-waals TM2 S 466 2x45 G.HN E 28 G.HN.52
Hydrophobic ICL3 L 658 - G.S6 Y 320 G.S6.02
Polar ICL3 T 659 - G.S6 T 321 G.S6.03
Van-der-waals ICL3 T 659 - G.S6 T 321 G.S6.03
Hydrophobic TM3 L 551 3x54 G.H5 C 351 G.H5.23
Van-der-waals TM3 L 551 3x54 G.H5 C 351 G.H5.23
Hydrophobic ICL2 T 558 - G.H5 I 343 G.H5.15
Hydrophobic TM5 L 651 5x62 G.H5 L 348 G.H5.20
Hydrophobic ICL3 L 658 - G.H5 A 338 G.H5.10
Van-der-waals ICL3 L 658 - G.H5 A 338 G.H5.10
Polar ICL3 T 661 - G.S6 I 319 G.S6.01
Hydrophobic ICL3 T 661 - G.S6 I 319 G.S6.01
Van-der-waals ICL3 T 661 - G.S6 I 319 G.S6.01
Hydrophobic TM3 L 555 3x58 G.H5 N 347 G.H5.19
Hydrophobic TM2 V 467 2x46 G.H5 C 351 G.H5.23
Polar ICL3 S 660 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 S 660 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 S 660 - G.h4s6 E 318 G.h4s6.12
Polar ICL1 R 460 12x48 G.HN R 24 G.HN.48
Van-der-waals ICL1 R 460 12x48 G.HN R 24 G.HN.48
Polar ICL3 K 662 - G.h4s6 D 315 G.h4s6.09
Hydrophobic ICL3 K 662 - G.h4s6 D 315 G.h4s6.09
Van-der-waals ICL3 K 662 - G.h4s6 D 315 G.h4s6.09