Golf - CCR7 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 81.1

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 14.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 R 154 3x50 G.H5 L 380 G.H5.25
Hydrophobic TM6 A 261 6x33 G.H5 L 375 G.H5.20
Hydrophobic TM2 T 93 2x39 G.H5 Y 378 G.H5.23
Van-der-waals TM2 T 93 2x39 G.H5 Y 378 G.H5.23
Hydrophobic H8 G 330 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 G 330 8x47 G.H5 E 379 G.H5.24
Polar TM3 I 158 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 I 158 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 I 158 3x54 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 R 170 - G.HN L 37 G.HN.52
Van-der-waals ICL2 R 170 - G.HN L 37 G.HN.52
Hydrophobic ICL2 A 169 34x58 G.HN L 37 G.HN.52
Polar TM3 A 157 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 157 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 157 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 R 154 3x50 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 A 161 34x50 G.H5 Q 371 G.H5.16
Van-der-waals ICL2 A 161 34x50 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 V 162 34x51 G.H5 I 370 G.H5.15
Polar ICL2 V 162 34x51 G.S1 H 43 G.S1.02
Hydrophobic ICL2 V 162 34x51 G.S1 H 43 G.S1.02
Van-der-waals ICL2 V 162 34x51 G.S1 H 43 G.S1.02
Polar ICL2 H 165 34x54 G.hns1 K 40 G.hns1.02
Van-der-waals ICL2 H 165 34x54 G.hns1 K 40 G.hns1.02
Hydrophobic ICL2 V 162 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 V 162 34x51 G.S3 V 204 G.S3.01
Polar TM3 D 153 3x49 G.H5 Y 378 G.H5.23
Hydrophobic TM3 D 153 3x49 G.H5 Y 378 G.H5.23
Van-der-waals TM3 D 153 3x49 G.H5 Y 378 G.H5.23
Polar TM6 K 260 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM6 K 260 6x32 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 260 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM6 F 256 6x28 G.H5 L 375 G.H5.20
Van-der-waals TM6 F 256 6x28 G.H5 L 375 G.H5.20
Polar ICL2 R 166 34x55 G.hns1 K 40 G.hns1.02
Hydrophobic ICL2 R 166 34x55 G.hns1 K 40 G.hns1.02
Van-der-waals ICL2 R 166 34x55 G.hns1 K 40 G.hns1.02
Hydrophobic TM6 V 264 6x36 G.H5 L 380 G.H5.25
Van-der-waals TM6 V 264 6x36 G.H5 L 380 G.H5.25
Polar ICL2 A 161 34x50 G.H5 H 374 G.H5.19
Hydrophobic ICL2 A 161 34x50 G.H5 H 374 G.H5.19
Van-der-waals ICL2 A 161 34x50 G.H5 H 374 G.H5.19
Polar H8 V 331 8x48 G.H5 E 379 G.H5.24
Hydrophobic H8 V 331 8x48 G.H5 E 379 G.H5.24
Van-der-waals H8 V 331 8x48 G.H5 E 379 G.H5.24
Hydrophobic TM6 F 256 6x28 G.H5 D 368 G.H5.13
Van-der-waals TM6 F 256 6x28 G.H5 D 368 G.H5.13
Hydrophobic TM6 F 256 6x28 G.H5 L 381 G.H5.26
Van-der-waals TM6 F 256 6x28 G.H5 L 381 G.H5.26
Aromatic TM6 F 256 6x28 G.H5 R 372 G.H5.17
Hydrophobic TM6 F 256 6x28 G.H5 R 372 G.H5.17
Van-der-waals TM6 F 256 6x28 G.H5 R 372 G.H5.17
Hydrophobic TM3 I 158 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 I 158 3x54 G.H5 L 375 G.H5.20
Hydrophobic C-term E 369 - G.hgh4 D 310 G.hgh4.13
Polar H8 F 333 8x50 G.H5 E 379 G.H5.24
Van-der-waals H8 F 333 8x50 G.H5 E 379 G.H5.24
Polar TM6 A 261 6x33 G.H5 L 380 G.H5.25
Hydrophobic TM6 A 261 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 A 261 6x33 G.H5 L 380 G.H5.25
Hydrophobic ICL3 N 255 - G.S6 Y 347 G.S6.02
Polar ICL3 N 255 - G.H5 R 372 G.H5.17
Hydrophobic ICL3 N 255 - G.H5 R 372 G.H5.17
Van-der-waals ICL3 N 255 - G.H5 R 372 G.H5.17
Aromatic ICL2 H 165 34x54 G.S1 H 43 G.S1.02
Hydrophobic ICL2 H 165 34x54 G.S1 H 43 G.S1.02
Van-der-waals ICL2 H 165 34x54 G.S1 H 43 G.S1.02
Hydrophobic ICL2 A 169 34x58 G.hns1 K 40 G.hns1.02
Hydrophobic TM3 I 158 3x54 G.H5 L 380 G.H5.25
Hydrophobic TM3 A 157 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 A 157 3x53 G.H5 Y 378 G.H5.23
Hydrophobic C-term A 370 - G.hgh4 D 310 G.hgh4.13
Hydrophobic ICL2 A 161 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 A 161 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 R 166 34x55 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 R 166 34x55 G.hns1 A 41 G.hns1.03
Polar ICL2 R 168 34x57 G.H5 Q 377 G.H5.22
Van-der-waals ICL2 R 168 34x57 G.H5 Q 377 G.H5.22
Hydrophobic TM5 L 250 5x65 G.H5 L 375 G.H5.20
Van-der-waals TM5 L 250 5x65 G.H5 L 375 G.H5.20
Polar TM6 K 260 6x32 G.H5 E 379 G.H5.24
Hydrophobic TM2 T 91 2x37 G.H5 Q 377 G.H5.22
Van-der-waals TM2 T 91 2x37 G.H5 Q 377 G.H5.22
Polar H8 K 332 8x49 G.H5 E 379 G.H5.24
Hydrophobic H8 K 332 8x49 G.H5 E 379 G.H5.24
Van-der-waals H8 K 332 8x49 G.H5 E 379 G.H5.24
Hydrophobic C-term T 372 - G.hgh4 T 312 G.hgh4.15
Van-der-waals C-term T 372 - G.hgh4 T 312 G.hgh4.15
Hydrophobic TM6 E 257 6x29 G.H5 L 381 G.H5.26
Hydrophobic ICL2 H 165 34x54 G.H5 M 373 G.H5.18
Van-der-waals ICL2 H 165 34x54 G.H5 M 373 G.H5.18
Hydrophobic ICL2 V 162 34x51 G.H5 R 367 G.H5.12
Hydrophobic TM5 T 249 5x64 G.H5 Q 371 G.H5.16
Van-der-waals TM5 T 249 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM6 F 256 6x28 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 A 164 34x53 G.H5 H 374 G.H5.19