Golf - D1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 78.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.8
PAE mean: 12.1


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 I 125 3x54 G.H5 H 374 G.H5.19
Hydrophobic C-term I 358 - G.H3 R 267 G.H3.16
Van-der-waals C-term I 358 - G.H3 R 267 G.H3.16
Hydrophobic ICL2 P 128 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 P 128 34x50 G.H5 I 370 G.H5.15
Aromatic ICL2 F 129 34x51 G.H5 F 363 G.H5.08
Hydrophobic ICL2 F 129 34x51 G.H5 F 363 G.H5.08
Van-der-waals ICL2 F 129 34x51 G.H5 F 363 G.H5.08
Polar TM5 Q 224 5x68 G.H5 D 368 G.H5.13
Hydrophobic TM5 Q 224 5x68 G.H5 D 368 G.H5.13
Van-der-waals TM5 Q 224 5x68 G.H5 D 368 G.H5.13
Hydrophobic ICL1 S 56 12x52 G.HN R 36 G.HN.51
Van-der-waals ICL1 S 56 12x52 G.HN R 36 G.HN.51
Hydrophobic TM5 A 238 5x82 G.H4 D 330 G.H4.13
Van-der-waals TM5 A 238 5x82 G.H4 D 330 G.H4.13
Polar TM6 K 269 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM6 K 269 6x32 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 269 6x32 G.H5 L 381 G.H5.26
Polar TM5 A 238 5x82 G.H4 R 334 G.H4.17
Hydrophobic TM5 A 238 5x82 G.H4 R 334 G.H4.17
Van-der-waals TM5 A 238 5x82 G.H4 R 334 G.H4.17
Hydrophobic C-term L 432 - G.H5 R 360 G.H5.05
Ionic TM5 H 237 5x81 G.H4 D 330 G.H4.13
Hydrophobic ICL2 F 129 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 F 129 34x51 G.S3 V 204 G.S3.01
Hydrophobic C-term L 432 - G.S2 V 201 G.S2.08
Hydrophobic TM5 A 221 5x65 G.H5 L 375 G.H5.20
Hydrophobic C-term L 432 - G.s2s3 D 202 G.s2s3.01
Van-der-waals C-term L 432 - G.s2s3 D 202 G.s2s3.01
Hydrophobic TM5 K 239 5x83 G.H4 R 334 G.H4.17
Hydrophobic TM3 I 125 3x54 G.H5 Y 378 G.H5.23
Hydrophobic TM6 V 270 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 V 270 6x33 G.H5 L 380 G.H5.25
Ionic TM5 R 227 5x71 G.H5 D 368 G.H5.13
Polar TM5 R 227 5x71 G.H5 D 368 G.H5.13
Van-der-waals TM5 R 227 5x71 G.H5 D 368 G.H5.13
Hydrophobic TM5 A 234 5x78 G.H4 L 333 G.H4.16
Ionic ICL2 E 132 34x54 G.H5 H 374 G.H5.19
Polar ICL2 R 133 34x55 G.s2s3 D 202 G.s2s3.01
Hydrophobic C-term I 435 - G.H1 H 66 G.H1.12
Van-der-waals C-term I 435 - G.H1 H 66 G.H1.12
Hydrophobic ICL2 F 129 34x51 G.H5 R 367 G.H5.12
Van-der-waals ICL2 F 129 34x51 G.H5 R 367 G.H5.12
Polar TM2 T 59 2x39 G.H5 Y 378 G.H5.23
Ionic TM6 K 269 6x32 G.H5 E 379 G.H5.24
Polar TM6 K 269 6x32 G.H5 E 379 G.H5.24
Ionic ICL2 E 132 34x54 G.S1 H 43 G.S1.02
Polar ICL2 E 132 34x54 G.S1 H 43 G.S1.02
Hydrophobic ICL2 E 132 34x54 G.S1 H 43 G.S1.02
Van-der-waals ICL2 E 132 34x54 G.S1 H 43 G.S1.02
Hydrophobic TM5 I 225 5x69 G.H5 L 381 G.H5.26
Van-der-waals TM5 I 225 5x69 G.H5 L 381 G.H5.26
Polar TM5 Q 224 5x68 G.H5 R 372 G.H5.17
Hydrophobic TM5 Q 224 5x68 G.H5 R 372 G.H5.17
Van-der-waals TM5 Q 224 5x68 G.H5 R 372 G.H5.17
Polar TM5 C 241 5x85 G.hgh4 T 306 G.hgh4.09
Hydrophobic TM4 T 136 4x38 G.HN L 37 G.HN.52
Hydrophobic TM5 H 237 5x81 G.hgh4 V 307 G.hgh4.10
Ionic H8 R 338 8x51 G.H5 E 379 G.H5.24
Polar H8 R 338 8x51 G.H5 E 379 G.H5.24
Hydrophobic TM5 L 231 5x75 G.S6 P 348 G.S6.03
Hydrophobic TM5 A 234 5x78 G.H4 R 329 G.H4.12
Hydrophobic ICL2 F 129 34x51 G.H5 C 366 G.H5.11
Polar TM3 I 125 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 I 125 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 I 125 3x54 G.H5 Q 371 G.H5.16
Polar TM5 H 237 5x81 G.hgh4 T 306 G.hgh4.09
Van-der-waals TM5 H 237 5x81 G.hgh4 T 306 G.hgh4.09
Hydrophobic C-term P 437 - G.h1ha N 68 G.h1ha.02
Polar ICL3 T 244 - G.hgh4 N 304 G.hgh4.07
Hydrophobic ICL3 T 244 - G.hgh4 N 304 G.hgh4.07
Polar ICL1 S 56 12x52 G.hns1 K 40 G.hns1.02
Van-der-waals ICL1 S 56 12x52 G.hns1 K 40 G.hns1.02
Polar TM5 Q 242 5x86 G.hgh4 E 301 G.hgh4.04
Hydrophobic TM5 Q 242 5x86 G.hgh4 E 301 G.hgh4.04
Hydrophobic TM5 C 241 5x85 G.hgh4 Y 305 G.hgh4.08
Hydrophobic TM6 T 273 6x36 G.H5 L 380 G.H5.25
Van-der-waals TM6 T 273 6x36 G.H5 L 380 G.H5.25
Hydrophobic TM5 I 228 5x72 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM5 I 228 5x72 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 L 274 6x37 G.H5 L 380 G.H5.25
Van-der-waals TM6 L 274 6x37 G.H5 L 380 G.H5.25
Hydrophobic TM5 I 220 5x64 G.H5 Q 371 G.H5.16
Van-der-waals TM5 I 220 5x64 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 P 128 34x50 G.H5 H 374 G.H5.19
Hydrophobic ICL2 F 129 34x51 G.S3 F 206 G.S3.03
Hydrophobic TM5 A 235 5x79 G.H4 L 333 G.H4.16
Hydrophobic TM3 I 125 3x54 G.H5 L 375 G.H5.20
Hydrophobic TM5 Q 224 5x68 G.H5 L 375 G.H5.20
Van-der-waals TM5 Q 224 5x68 G.H5 L 375 G.H5.20
Polar TM5 Q 242 5x86 G.H4 R 334 G.H4.17
Hydrophobic TM5 Q 242 5x86 G.H4 R 334 G.H4.17
Van-der-waals TM5 Q 242 5x86 G.H4 R 334 G.H4.17
Polar TM5 H 237 5x81 G.hgh4 P 308 G.hgh4.11
Hydrophobic TM5 H 237 5x81 G.hgh4 P 308 G.hgh4.11
Van-der-waals TM5 H 237 5x81 G.hgh4 P 308 G.hgh4.11
Hydrophobic TM3 A 124 3x53 G.H5 Y 378 G.H5.23
Hydrophobic TM5 I 228 5x72 G.H5 R 372 G.H5.17
Van-der-waals TM5 I 228 5x72 G.H5 R 372 G.H5.17
Hydrophobic C-term V 430 - G.s2s3 D 202 G.s2s3.01
Hydrophobic ICL2 F 129 34x51 G.H5 I 370 G.H5.15
Van-der-waals ICL2 F 129 34x51 G.H5 I 370 G.H5.15
Hydrophobic TM5 I 228 5x72 G.H5 L 381 G.H5.26
Hydrophobic TM3 I 125 3x54 G.H5 L 380 G.H5.25
Hydrophobic ICL2 P 128 34x50 G.H5 R 367 G.H5.12
Ionic C-term D 429 - G.H5 R 360 G.H5.05
Polar C-term D 429 - G.H5 R 360 G.H5.05
Van-der-waals C-term D 429 - G.H5 R 360 G.H5.05
Polar H8 A 335 8x48 G.H5 E 379 G.H5.24
Aromatic TM3 R 121 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 121 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM5 K 239 5x83 G.h4s6 A 338 G.h4s6.04
Polar TM6 T 273 6x36 G.H5 E 379 G.H5.24
Hydrophobic TM6 T 273 6x36 G.H5 E 379 G.H5.24
Van-der-waals TM6 T 273 6x36 G.H5 E 379 G.H5.24
Polar ICL2 R 133 34x55 G.s2s3 K 203 G.s2s3.02
Hydrophobic ICL2 R 133 34x55 G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 R 133 34x55 G.s2s3 K 203 G.s2s3.02
Hydrophobic TM4 P 137 4x39 G.HN L 37 G.HN.52
Hydrophobic TM5 I 217 5x61 G.H5 L 380 G.H5.25
Van-der-waals TM5 I 217 5x61 G.H5 L 380 G.H5.25
Hydrophobic C-term I 358 - G.H3 W 268 G.H3.17
Aromatic ICL2 F 129 34x51 G.S1 H 43 G.S1.02
Hydrophobic ICL2 F 129 34x51 G.S1 H 43 G.S1.02
Van-der-waals ICL2 F 129 34x51 G.S1 H 43 G.S1.02
Polar TM3 A 124 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 124 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 124 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM5 L 231 5x75 G.S6 Y 347 G.S6.02
Polar TM5 K 239 5x83 G.h4s6 T 337 G.h4s6.03
Hydrophobic TM5 K 239 5x83 G.h4s6 T 337 G.h4s6.03
Van-der-waals TM5 K 239 5x83 G.h4s6 T 337 G.h4s6.03
Ionic TM5 R 233 5x77 G.hgh4 D 310 G.hgh4.13
Polar TM5 Q 224 5x68 G.H5 Q 371 G.H5.16
Hydrophobic TM5 Q 224 5x68 G.H5 Q 371 G.H5.16
Van-der-waals TM5 Q 224 5x68 G.H5 Q 371 G.H5.16
Hydrophobic TM5 A 235 5x79 G.h4s6 T 337 G.h4s6.03
Van-der-waals TM5 A 235 5x79 G.h4s6 T 337 G.h4s6.03