Golf - GABAB2 complex model

GPCR CLASS (FAMILY)

C (Glutamate)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 72.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.4
PAE mean: 22.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL3 A 685 - G.H5 L 380 G.H5.25
Van-der-waals ICL3 A 685 - G.H5 L 380 G.H5.25
Hydrophobic ICL3 I 683 - G.H5 L 375 G.H5.20
Van-der-waals ICL3 I 683 - G.H5 L 375 G.H5.20
Aromatic H8 F 760 8x55 G.H5 R 372 G.H5.17
Hydrophobic H8 F 760 8x55 G.H5 R 372 G.H5.17
Hydrophobic C-term Q 889 - G.HN R 36 G.HN.51
Van-der-waals C-term Q 889 - G.HN R 36 G.HN.51
Hydrophobic TM3 I 581 3x57 G.H5 H 374 G.H5.19
Hydrophobic ICL1 S 515 12x53 G.H5 L 380 G.H5.25
Hydrophobic H8 F 760 8x55 G.H5 L 375 G.H5.20
Van-der-waals H8 F 760 8x55 G.H5 L 375 G.H5.20
Polar C-term T 773 - G.hgh4 T 312 G.hgh4.15
Hydrophobic C-term T 773 - G.hgh4 T 312 G.hgh4.15
Van-der-waals C-term T 773 - G.hgh4 T 312 G.hgh4.15
Hydrophobic ICL2 K 586 - G.S3 V 204 G.S3.01
Van-der-waals ICL2 K 586 - G.S3 V 204 G.S3.01
Hydrophobic TM4 K 593 4x28 G.H5 Y 378 G.H5.23
Hydrophobic ICL3 A 685 - G.H5 L 375 G.H5.20
Van-der-waals ICL3 A 685 - G.H5 L 375 G.H5.20
Hydrophobic C-term L 892 - G.HN R 36 G.HN.51
Van-der-waals C-term L 892 - G.HN R 36 G.HN.51
Polar C-term N 781 - G.h4s6 G 340 G.h4s6.09
Hydrophobic C-term N 781 - G.h4s6 G 340 G.h4s6.09
Van-der-waals C-term N 781 - G.h4s6 G 340 G.h4s6.09
Polar ICL2 K 589 - G.h2s4 T 229 G.h2s4.05
Hydrophobic ICL2 K 589 - G.h2s4 T 229 G.h2s4.05
Van-der-waals ICL2 K 589 - G.h2s4 T 229 G.h2s4.05
Hydrophobic ICL3 L 686 - G.H5 L 375 G.H5.20
Van-der-waals ICL3 L 686 - G.H5 L 375 G.H5.20
Polar C-term S 771 - G.hgh4 T 312 G.hgh4.15
Hydrophobic C-term S 771 - G.hgh4 T 312 G.hgh4.15
Van-der-waals C-term S 771 - G.hgh4 T 312 G.hgh4.15
Polar H8 N 757 8x52 G.h4s6 Y 345 G.h4s6.20
Hydrophobic H8 N 757 8x52 G.h4s6 Y 345 G.h4s6.20
Van-der-waals H8 N 757 8x52 G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL1 M 514 12x52 G.H5 L 381 G.H5.26
Polar C-term T 775 - G.hgh4 D 310 G.hgh4.13
Hydrophobic C-term T 775 - G.hgh4 D 310 G.hgh4.13
Van-der-waals C-term T 775 - G.hgh4 D 310 G.hgh4.13
Hydrophobic TM3 I 581 3x57 G.H5 L 375 G.H5.20
Ionic ICL1 K 513 12x51 G.H5 E 379 G.H5.24
Polar ICL1 K 513 12x51 G.H5 E 379 G.H5.24
Hydrophobic ICL1 K 513 12x51 G.H5 E 379 G.H5.24
Van-der-waals ICL1 K 513 12x51 G.H5 E 379 G.H5.24
Van-der-waals C-term L 788 - G.h4s6 K 343 G.h4s6.12
Polar ICL2 K 590 - G.H5 Y 378 G.H5.23
Hydrophobic ICL2 K 589 - G.H5 H 374 G.H5.19
Van-der-waals ICL2 K 589 - G.H5 H 374 G.H5.19
Hydrophobic H8 F 760 8x55 G.H5 L 381 G.H5.26
Van-der-waals H8 F 760 8x55 G.H5 L 381 G.H5.26
Hydrophobic ICL2 M 587 - G.H5 C 366 G.H5.11
Van-der-waals ICL2 M 587 - G.H5 C 366 G.H5.11
Polar ICL2 I 592 - G.H5 Y 378 G.H5.23
Hydrophobic ICL2 I 592 - G.H5 Y 378 G.H5.23
Van-der-waals ICL2 I 592 - G.H5 Y 378 G.H5.23
Hydrophobic ICL2 M 587 - G.S3 V 204 G.S3.01
Hydrophobic ICL1 K 510 12x48 G.H5 L 381 G.H5.26
Van-der-waals ICL1 K 510 12x48 G.H5 L 381 G.H5.26
Polar ICL2 K 588 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 K 588 - G.H5 H 374 G.H5.19
Van-der-waals ICL2 K 588 - G.H5 H 374 G.H5.19
Polar ICL2 M 587 - G.S1 H 43 G.S1.02
Hydrophobic ICL2 M 587 - G.S1 H 43 G.S1.02
Van-der-waals ICL2 M 587 - G.S1 H 43 G.S1.02
Polar C-term S 774 - G.hgh4 D 310 G.hgh4.13
Hydrophobic C-term S 774 - G.hgh4 D 310 G.hgh4.13
Van-der-waals C-term S 774 - G.hgh4 D 310 G.hgh4.13
Polar ICL2 K 589 - G.h2s4 D 227 G.h2s4.03
Polar H8 N 757 8x52 G.h4s6 G 342 G.h4s6.11
Van-der-waals H8 N 757 8x52 G.h4s6 G 342 G.h4s6.11
Polar C-term S 776 - G.hgh4 D 310 G.hgh4.13
Hydrophobic C-term S 776 - G.hgh4 D 310 G.hgh4.13
Van-der-waals C-term S 776 - G.hgh4 D 310 G.hgh4.13
Hydrophobic TM3 R 577 3x53 G.H5 L 380 G.H5.25
Van-der-waals TM3 R 577 3x53 G.H5 L 380 G.H5.25
Hydrophobic ICL2 I 591 - G.H5 Q 377 G.H5.22
Van-der-waals ICL2 I 591 - G.H5 Q 377 G.H5.22
Hydrophobic ICL2 K 586 - G.s2s3 K 203 G.s2s3.02
Polar C-term K 772 - G.hgh4 T 312 G.hgh4.15
Hydrophobic C-term K 772 - G.hgh4 T 312 G.hgh4.15
Van-der-waals C-term K 772 - G.hgh4 T 312 G.hgh4.15
Hydrophobic C-term L 788 - G.h3s5 R 270 G.h3s5.01
Van-der-waals C-term L 788 - G.h3s5 R 270 G.h3s5.01
Hydrophobic ICL2 I 591 - G.H5 H 374 G.H5.19
Hydrophobic ICL3 L 686 - G.H5 L 380 G.H5.25
Hydrophobic ICL1 M 514 12x52 G.H5 L 380 G.H5.25
Van-der-waals ICL1 M 514 12x52 G.H5 L 380 G.H5.25
Polar C-term S 784 - G.h4s6 T 339 G.h4s6.08
Van-der-waals C-term S 784 - G.h4s6 T 339 G.h4s6.08
Hydrophobic TM3 I 581 3x57 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 M 587 - G.H5 R 367 G.H5.12
Van-der-waals ICL2 M 587 - G.H5 R 367 G.H5.12
Hydrophobic TM3 I 581 3x57 G.H5 Y 378 G.H5.23
Van-der-waals TM3 I 581 3x57 G.H5 Y 378 G.H5.23
Polar ICL1 M 514 12x52 G.H5 E 379 G.H5.24
Hydrophobic ICL1 M 514 12x52 G.H5 E 379 G.H5.24
Van-der-waals ICL1 M 514 12x52 G.H5 E 379 G.H5.24
Hydrophobic C-term V 777 - G.h4s6 T 337 G.h4s6.03
Polar C-term T 775 - G.H4 R 329 G.H4.12
Hydrophobic C-term T 775 - G.H4 R 329 G.H4.12
Van-der-waals C-term T 775 - G.H4 R 329 G.H4.12
Hydrophobic ICL2 K 589 - G.S1 H 43 G.S1.02
Hydrophobic TM3 F 582 3x58 G.H5 Q 371 G.H5.16
Van-der-waals TM3 F 582 3x58 G.H5 Q 371 G.H5.16
Hydrophobic ICL3 A 685 - G.H5 L 381 G.H5.26
Hydrophobic ICL2 M 587 - G.H5 F 363 G.H5.08
Van-der-waals ICL2 M 587 - G.H5 F 363 G.H5.08
Polar C-term Q 764 - G.H5 R 367 G.H5.12
Hydrophobic C-term Q 764 - G.H5 R 367 G.H5.12
Van-der-waals C-term Q 764 - G.H5 R 367 G.H5.12
Hydrophobic ICL2 M 587 - G.S3 F 206 G.S3.03
Van-der-waals ICL2 M 587 - G.S3 F 206 G.S3.03
Hydrophobic ICL2 M 587 - G.H5 I 370 G.H5.15
Van-der-waals ICL2 M 587 - G.H5 I 370 G.H5.15
Hydrophobic TM3 R 577 3x53 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 V 585 - G.S3 V 204 G.S3.01
Van-der-waals ICL2 V 585 - G.S3 V 204 G.S3.01
Hydrophobic C-term L 788 - G.h4s6 D 341 G.h4s6.10
Polar ICL2 K 590 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 K 590 - G.H5 H 374 G.H5.19
Van-der-waals ICL2 K 590 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 I 591 - G.H5 Y 378 G.H5.23
Van-der-waals ICL2 I 591 - G.H5 Y 378 G.H5.23
Hydrophobic C-term T 775 - G.H4 L 333 G.H4.16
Van-der-waals C-term T 775 - G.H4 L 333 G.H4.16
Hydrophobic C-term T 773 - G.H4 F 326 G.H4.08