Ggust - CCK2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar H8 H 394 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 H 394 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 H 394 8x47 G.H5 G 352 G.H5.24
Hydrophobic ICL2 P 159 34x50 G.H5 I 344 G.H5.16
Hydrophobic C-term I 430 - G.H2 I 212 G.H2.08
Hydrophobic ICL2 L 160 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 160 34x51 G.S3 L 194 G.S3.01
Hydrophobic C-term S 434 - G.H2 R 205 G.H2.01
Hydrophobic C-term L 433 - G.H3 S 252 G.H3.11
Van-der-waals C-term L 433 - G.H3 S 252 G.H3.11
Polar ICL3 S 259 - G.H4 K 304 G.H4.12
Hydrophobic TM5 L 245 5x65 G.H5 L 348 G.H5.20
Hydrophobic C-term I 430 - G.H2 R 208 G.H2.04
Van-der-waals C-term I 430 - G.H2 R 208 G.H2.04
Hydrophobic C-term A 431 - G.H2 K 209 G.H2.05
Ionic TM6 K 324 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 324 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 K 324 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 324 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 R 152 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 152 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 335 6x37 G.H5 L 353 G.H5.25
Hydrophobic ICL2 V 164 34x55 G.HN E 28 G.HN.52
Hydrophobic TM2 T 87 2x37 G.H5 D 350 G.H5.22
Hydrophobic ICL2 P 159 34x50 G.H5 I 343 G.H5.15
Hydrophobic C-term I 430 - G.h2s4 F 215 G.h2s4.01
Hydrophobic ICL2 R 163 34x54 G.H5 I 343 G.H5.15
Polar H8 R 396 8x49 G.H5 K 349 G.H5.21
Hydrophobic H8 R 396 8x49 G.H5 K 349 G.H5.21
Van-der-waals H8 R 396 8x49 G.H5 K 349 G.H5.21
Hydrophobic ICL2 L 160 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 160 34x51 G.H5 F 336 G.H5.08
Ionic H8 R 396 8x49 G.H5 D 350 G.H5.22
Polar H8 R 396 8x49 G.H5 D 350 G.H5.22
Van-der-waals H8 R 396 8x49 G.H5 D 350 G.H5.22
Hydrophobic TM3 I 156 3x54 G.H5 L 353 G.H5.25
Van-der-waals TM3 I 156 3x54 G.H5 L 353 G.H5.25
Polar TM2 T 89 2x39 G.H5 D 350 G.H5.22
Ionic ICL2 R 163 34x54 G.H5 E 346 G.H5.18
Polar TM3 R 152 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 152 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 152 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM6 M 334 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 334 6x36 G.H5 L 353 G.H5.25
Hydrophobic C-term L 433 - G.H3 L 249 G.H3.08
Hydrophobic C-term L 436 - G.H3 H 248 G.H3.07
Van-der-waals C-term L 436 - G.H3 H 248 G.H3.07
Polar TM3 A 155 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 155 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 155 3x53 G.H5 N 347 G.H5.19
Aromatic C-term Y 438 - G.H3 H 248 G.H3.07
Hydrophobic C-term Y 438 - G.H3 H 248 G.H3.07
Van-der-waals C-term Y 438 - G.H3 H 248 G.H3.07
Polar ICL2 R 163 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 R 163 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 163 34x54 G.hns1 A 31 G.hns1.02
Polar ICL2 R 163 34x54 G.S1 T 33 G.S1.01
Hydrophobic ICL2 V 164 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 V 164 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 L 160 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 160 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM3 A 155 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM3 I 156 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 156 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 V 331 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 331 6x33 G.H5 L 353 G.H5.25
Ionic ICL3 R 262 - G.H4 D 298 G.H4.05
Polar ICL3 R 262 - G.H4 D 298 G.H4.05
Hydrophobic ICL3 R 262 - G.H4 D 298 G.H4.05
Van-der-waals ICL3 R 262 - G.H4 D 298 G.H4.05
Hydrophobic ICL2 P 159 34x50 G.H5 T 340 G.H5.12
Polar TM2 T 89 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 89 2x39 G.H5 C 351 G.H5.23