Golf - GPR161 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 73.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.8
PAE mean: 11.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 A 215 5x65 G.H5 L 375 G.H5.20
Ionic C-term R 354 - G.h2s4 D 227 G.h2s4.03
Ionic C-term E 347 - G.h4s6 K 343 G.h4s6.12
Polar C-term E 347 - G.h4s6 K 343 G.h4s6.12
Van-der-waals C-term E 347 - G.h4s6 K 343 G.h4s6.12
Polar C-term I 361 - G.H3 R 267 G.H3.16
Van-der-waals C-term I 361 - G.H3 R 267 G.H3.16
Polar TM5 H 223 5x73 G.H4 R 329 G.H4.12
Van-der-waals TM5 H 223 5x73 G.H4 R 329 G.H4.12
Hydrophobic TM3 A 128 3x53 G.H5 Y 378 G.H5.23
Aromatic TM6 Y 261 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 Y 261 6x26 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 Y 261 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL2 M 137 34x55 G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 M 137 34x55 G.s2s3 K 203 G.s2s3.02
Hydrophobic TM6 V 260 6x25 G.h4s6 T 337 G.h4s6.03
Polar ICL3 V 228 - G.hgh4 N 304 G.hgh4.07
Hydrophobic ICL3 V 228 - G.hgh4 N 304 G.hgh4.07
Van-der-waals ICL3 V 228 - G.hgh4 N 304 G.hgh4.07
Polar TM6 K 267 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM6 K 267 6x32 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 267 6x32 G.H5 L 381 G.H5.26
Hydrophobic ICL2 M 133 34x51 G.S3 F 206 G.S3.03
Van-der-waals ICL2 M 133 34x51 G.S3 F 206 G.S3.03
Hydrophobic C-term F 349 - G.h3s5 T 271 G.h3s5.02
Van-der-waals C-term F 349 - G.h3s5 T 271 G.h3s5.02
Hydrophobic C-term I 365 - G.H2 R 219 G.H2.05
Hydrophobic ICL3 V 227 - G.H4 R 334 G.H4.17
Hydrophobic ICL2 M 137 34x55 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 M 137 34x55 G.hns1 A 41 G.hns1.03
Hydrophobic TM5 G 225 5x75 G.hgh4 Y 305 G.hgh4.08
Hydrophobic C-term L 368 - G.H3 I 263 G.H3.12
Hydrophobic TM6 I 272 6x37 G.H5 L 380 G.H5.25
Van-der-waals TM6 I 272 6x37 G.H5 L 380 G.H5.25
Hydrophobic TM5 G 225 5x75 G.hgh4 P 308 G.hgh4.11
Van-der-waals TM5 G 225 5x75 G.hgh4 P 308 G.hgh4.11
Aromatic TM3 R 125 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 125 3x50 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 P 136 34x54 G.hns1 K 40 G.hns1.02
Van-der-waals ICL2 P 136 34x54 G.hns1 K 40 G.hns1.02
Hydrophobic C-term I 448 - G.h1ha V 67 G.h1ha.01
Polar TM3 V 129 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 129 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 V 129 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM5 C 224 5x74 G.H4 L 333 G.H4.16
Van-der-waals TM5 C 224 5x74 G.H4 L 333 G.H4.16
Polar C-term S 360 - G.H3 R 267 G.H3.16
Van-der-waals C-term S 360 - G.H3 R 267 G.H3.16
Polar TM6 Y 261 6x26 G.S6 C 346 G.S6.01
Van-der-waals TM6 Y 261 6x26 G.S6 C 346 G.S6.01
Aromatic ICL2 Y 135 34x53 G.H5 H 374 G.H5.19
Hydrophobic ICL2 Y 135 34x53 G.H5 H 374 G.H5.19
Hydrophobic ICL3 V 230 - G.hgh4 N 304 G.hgh4.07
Hydrophobic ICL2 P 132 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 P 132 34x50 G.H5 I 370 G.H5.15
Hydrophobic C-term L 368 - G.h2s4 F 225 G.h2s4.01
Polar TM5 C 224 5x74 G.H4 D 330 G.H4.13
Hydrophobic TM5 C 224 5x74 G.H4 D 330 G.H4.13
Van-der-waals TM5 C 224 5x74 G.H4 D 330 G.H4.13
Hydrophobic C-term I 361 - G.H2 I 222 G.H2.08
Van-der-waals C-term I 361 - G.H2 I 222 G.H2.08
Hydrophobic C-term L 368 - G.H2 R 218 G.H2.04
Van-der-waals C-term L 368 - G.H2 R 218 G.H2.04
Polar C-term H 450 - G.H1 R 63 G.H1.09
Hydrophobic C-term H 450 - G.H1 R 63 G.H1.09
Van-der-waals C-term H 450 - G.H1 R 63 G.H1.09
Ionic TM5 K 218 5x68 G.H5 D 368 G.H5.13
Polar TM5 K 218 5x68 G.H5 D 368 G.H5.13
Hydrophobic TM5 K 218 5x68 G.H5 D 368 G.H5.13
Van-der-waals TM5 K 218 5x68 G.H5 D 368 G.H5.13
Hydrophobic C-term L 368 - G.H3 S 262 G.H3.11
Van-der-waals C-term L 368 - G.H3 S 262 G.H3.11
Hydrophobic TM5 I 211 5x61 G.H5 L 380 G.H5.25
Van-der-waals TM5 I 211 5x61 G.H5 L 380 G.H5.25
Hydrophobic C-term I 365 - G.H2 I 222 G.H2.08
Polar H8 K 329 8x48 G.H5 K 376 G.H5.21
Van-der-waals H8 K 329 8x48 G.H5 K 376 G.H5.21
Hydrophobic TM7 W 327 7x56 G.H5 E 379 G.H5.24
Hydrophobic C-term I 361 - G.h2s4 N 226 G.h2s4.02
Polar TM3 A 128 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 128 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 128 3x53 G.H5 H 374 G.H5.19
Hydrophobic ICL2 V 134 34x52 G.S3 V 204 G.S3.01
Hydrophobic TM5 K 218 5x68 G.H5 L 375 G.H5.20
Ionic H8 K 329 8x48 G.H5 E 379 G.H5.24
Polar H8 K 329 8x48 G.H5 E 379 G.H5.24
Hydrophobic H8 K 329 8x48 G.H5 E 379 G.H5.24
Van-der-waals H8 K 329 8x48 G.H5 E 379 G.H5.24
Hydrophobic TM5 A 219 5x69 G.H5 L 381 G.H5.26
Ionic H8 R 332 8x51 G.H5 E 379 G.H5.24
Polar H8 R 332 8x51 G.H5 E 379 G.H5.24
Hydrophobic ICL3 V 227 - G.hgh4 Y 305 G.hgh4.08
Hydrophobic ICL3 V 228 - G.hgh4 T 306 G.hgh4.09
Hydrophobic ICL3 V 227 - G.hgh4 N 304 G.hgh4.07
Hydrophobic ICL2 M 133 34x51 G.H5 R 367 G.H5.12
Van-der-waals ICL2 M 133 34x51 G.H5 R 367 G.H5.12
Hydrophobic ICL2 M 137 34x55 G.S3 V 204 G.S3.01
Hydrophobic TM6 T 271 6x36 G.H5 L 380 G.H5.25
Hydrophobic C-term S 362 - G.H2 I 222 G.H2.08
Van-der-waals C-term S 362 - G.H2 I 222 G.H2.08
Hydrophobic TM5 V 214 5x64 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 M 133 34x51 G.H5 F 363 G.H5.08
Hydrophobic C-term S 360 - G.H3 W 268 G.H3.17
Van-der-waals C-term S 360 - G.H3 W 268 G.H3.17
Hydrophobic C-term I 365 - G.h2s4 F 225 G.h2s4.01
Van-der-waals C-term I 365 - G.h2s4 F 225 G.h2s4.01
Hydrophobic ICL2 M 133 34x51 G.H5 C 366 G.H5.11
Van-der-waals ICL2 M 133 34x51 G.H5 C 366 G.H5.11
Hydrophobic ICL2 P 136 34x54 G.hns1 A 41 G.hns1.03
Polar TM5 H 223 5x73 G.hgh4 D 310 G.hgh4.13
Hydrophobic TM5 H 223 5x73 G.hgh4 D 310 G.hgh4.13
Van-der-waals TM5 H 223 5x73 G.hgh4 D 310 G.hgh4.13
Polar TM6 A 268 6x33 G.H5 L 380 G.H5.25
Hydrophobic TM6 A 268 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 A 268 6x33 G.H5 L 380 G.H5.25
Hydrophobic C-term P 348 - G.H3 W 268 G.H3.17
Polar C-term D 404 - H.HA Q 77 H.HA.06
Van-der-waals C-term D 404 - H.HA Q 77 H.HA.06
Hydrophobic TM5 I 211 5x61 G.H5 L 375 G.H5.20
Polar TM5 K 218 5x68 G.H5 R 372 G.H5.17
Hydrophobic TM5 K 218 5x68 G.H5 R 372 G.H5.17
Van-der-waals TM5 K 218 5x68 G.H5 R 372 G.H5.17
Hydrophobic C-term R 357 - G.h2s4 N 226 G.h2s4.02
Van-der-waals C-term R 357 - G.h2s4 N 226 G.h2s4.02
Polar ICL2 M 133 34x51 G.S1 H 43 G.S1.02
Hydrophobic ICL2 M 133 34x51 G.S1 H 43 G.S1.02
Hydrophobic C-term R 364 - G.H3 R 267 G.H3.16
Hydrophobic TM3 V 129 3x54 G.H5 Y 378 G.H5.23
Hydrophobic TM6 A 263 6x28 G.H5 L 381 G.H5.26
Van-der-waals TM6 A 263 6x28 G.H5 L 381 G.H5.26
Polar C-term R 354 - G.hns1 Y 39 G.hns1.01
Aromatic C-term R 354 - G.hns1 Y 39 G.hns1.01
Hydrophobic C-term R 354 - G.hns1 Y 39 G.hns1.01
Van-der-waals C-term R 354 - G.hns1 Y 39 G.hns1.01
Hydrophobic TM6 K 267 6x32 G.H5 L 380 G.H5.25
Hydrophobic ICL2 M 133 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 M 133 34x51 G.S3 V 204 G.S3.01
Hydrophobic TM5 V 214 5x64 G.H5 L 375 G.H5.20
Aromatic TM6 Y 261 6x26 G.H5 R 372 G.H5.17
Ionic TM6 K 267 6x32 G.H5 E 379 G.H5.24
Polar TM6 K 267 6x32 G.H5 E 379 G.H5.24
Hydrophobic TM6 K 267 6x32 G.H5 E 379 G.H5.24
Van-der-waals TM6 K 267 6x32 G.H5 E 379 G.H5.24
Polar TM5 K 218 5x68 G.H5 Q 371 G.H5.16
Hydrophobic TM5 K 218 5x68 G.H5 Q 371 G.H5.16
Van-der-waals TM5 K 218 5x68 G.H5 Q 371 G.H5.16
Polar TM5 T 226 5x76 G.hgh4 T 306 G.hgh4.09
Van-der-waals TM5 T 226 5x76 G.hgh4 T 306 G.hgh4.09
Hydrophobic TM5 C 224 5x74 G.H4 R 334 G.H4.17
Hydrophobic C-term L 368 - G.H3 L 259 G.H3.08
Polar H8 T 330 8x49 G.H5 Q 377 G.H5.22
Hydrophobic ICL2 P 132 34x50 G.H5 R 367 G.H5.12
Hydrophobic ICL2 P 132 34x50 G.H5 Q 371 G.H5.16
Van-der-waals ICL2 P 132 34x50 G.H5 Q 371 G.H5.16
Van-der-waals C-term L 368 - G.H3 N 266 G.H3.15
Hydrophobic TM3 V 129 3x54 G.H5 H 374 G.H5.19
Hydrophobic TM3 V 129 3x54 G.H5 L 375 G.H5.20
Polar C-term I 361 - G.H3 W 268 G.H3.17
Hydrophobic C-term I 361 - G.H3 W 268 G.H3.17
Van-der-waals C-term I 361 - G.H3 W 268 G.H3.17
Polar TM6 T 271 6x36 G.H5 E 379 G.H5.24
Hydrophobic TM6 T 271 6x36 G.H5 E 379 G.H5.24
Van-der-waals TM6 T 271 6x36 G.H5 E 379 G.H5.24
Hydrophobic ICL2 M 133 34x51 G.H5 I 370 G.H5.15
Van-der-waals ICL2 M 133 34x51 G.H5 I 370 G.H5.15
Hydrophobic TM5 C 224 5x74 G.hgh4 P 308 G.hgh4.11
Hydrophobic C-term S 398 - H.hbhc T 125 H.hbhc.02
Van-der-waals C-term S 398 - H.hbhc T 125 H.hbhc.02
Polar TM5 G 225 5x75 G.H4 D 330 G.H4.13
Hydrophobic TM5 G 225 5x75 G.H4 D 330 G.H4.13
Van-der-waals TM5 G 225 5x75 G.H4 D 330 G.H4.13
Polar TM2 S 62 2x39 G.H5 Y 378 G.H5.23