Gq - GPR162 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 68.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.7
PAE mean: 14.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Ionic C-term D 415 - G.H1 R 60 G.H1.09
Hydrophobic C-term F 369 - G.h3s5 Q 265 G.h3s5.01
Van-der-waals C-term F 369 - G.h3s5 Q 265 G.h3s5.01
Hydrophobic ICL2 P 122 34x50 G.H5 K 345 G.H5.12
Hydrophobic TM2 K 46 2x38 G.H5 Y 356 G.H5.23
Van-der-waals TM2 K 46 2x38 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 V 123 34x51 G.H5 K 345 G.H5.12
Hydrophobic ICL2 P 122 34x50 G.H5 I 348 G.H5.15
Van-der-waals ICL2 P 122 34x50 G.H5 I 348 G.H5.15
Polar H8 Y 330 8x50 G.H5 N 357 G.H5.24
Hydrophobic TM6 S 266 6x29 G.H5 L 353 G.H5.20
Van-der-waals TM6 S 266 6x29 G.H5 L 353 G.H5.20
Hydrophobic C-term V 385 - G.H3 R 256 G.H3.10
Van-der-waals C-term V 385 - G.H3 R 256 G.H3.10
Hydrophobic ICL2 L 127 34x55 G.S1 L 40 G.S1.02
Polar ICL3 S 256 - G.S6 I 324 G.S6.01
Van-der-waals ICL3 S 256 - G.S6 I 324 G.S6.01
Hydrophobic TM6 V 269 6x32 G.H5 L 358 G.H5.25
Van-der-waals TM6 V 269 6x32 G.H5 L 358 G.H5.25
Ionic TM5 R 209 5x68 G.H5 D 346 G.H5.13
Polar TM5 R 209 5x68 G.H5 D 346 G.H5.13
Van-der-waals TM5 R 209 5x68 G.H5 D 346 G.H5.13
Hydrophobic C-term L 394 - G.H2 R 213 G.H2.04
Van-der-waals C-term L 394 - G.H2 R 213 G.H2.04
Hydrophobic ICL3 L 257 - G.H5 F 339 G.H5.06
Hydrophobic TM6 T 265 6x28 G.H5 N 357 G.H5.24
Van-der-waals TM6 T 265 6x28 G.H5 N 357 G.H5.24
Hydrophobic C-term F 395 - G.h2s4 F 220 G.h2s4.01
Van-der-waals C-term F 395 - G.h2s4 F 220 G.h2s4.01
Hydrophobic TM5 R 209 5x68 G.H5 L 353 G.H5.20
Van-der-waals TM5 R 209 5x68 G.H5 L 353 G.H5.20
Hydrophobic H8 Y 330 8x50 G.H5 L 358 G.H5.25
Van-der-waals H8 Y 330 8x50 G.H5 L 358 G.H5.25
Hydrophobic TM2 L 52 2x44 G.H5 L 358 G.H5.25
Hydrophobic ICL3 G 222 - G.S6 F 328 G.S6.05
Hydrophobic ICL3 G 259 - G.h4s6 I 323 G.h4s6.20
Van-der-waals ICL3 G 259 - G.h4s6 I 323 G.h4s6.20
Hydrophobic C-term L 404 - G.H2 H 218 G.H2.09
Hydrophobic C-term F 395 - G.H2 I 217 G.H2.08
Van-der-waals C-term F 395 - G.H2 I 217 G.H2.08
Hydrophobic ICL2 V 123 34x51 G.S3 V 199 G.S3.01
Van-der-waals ICL2 V 123 34x51 G.S3 V 199 G.S3.01
Hydrophobic TM6 L 272 6x35 G.H5 L 358 G.H5.25
Van-der-waals TM6 L 272 6x35 G.H5 L 358 G.H5.25
Hydrophobic ICL2 L 127 34x55 G.hns1 R 38 G.hns1.03
Hydrophobic ICL3 G 220 - G.S6 H 327 G.S6.04
Hydrophobic TM5 R 209 5x68 G.H5 L 349 G.H5.16
Van-der-waals TM5 R 209 5x68 G.H5 L 349 G.H5.16
Hydrophobic ICL2 Y 125 34x53 G.H5 N 352 G.H5.19
Hydrophobic ICL2 P 122 34x50 G.H5 L 349 G.H5.16
Hydrophobic TM2 L 48 2x40 G.H5 L 358 G.H5.25
Polar TM2 K 46 2x38 G.H5 E 355 G.H5.22
Hydrophobic TM2 K 46 2x38 G.H5 E 355 G.H5.22
Van-der-waals TM2 K 46 2x38 G.H5 E 355 G.H5.22
Hydrophobic C-term L 388 - G.H3 A 253 G.H3.07
Hydrophobic TM3 M 118 3x53 G.H5 N 352 G.H5.19
Hydrophobic C-term L 388 - G.H2 R 210 G.H2.01
Hydrophobic TM6 V 269 6x32 G.H5 N 357 G.H5.24
Van-der-waals TM6 V 269 6x32 G.H5 N 357 G.H5.24
Hydrophobic TM2 L 48 2x40 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 R 126 34x54 G.H5 I 348 G.H5.15
Van-der-waals ICL2 R 126 34x54 G.H5 I 348 G.H5.15
Polar H8 R 329 8x49 G.H5 E 355 G.H5.22
Van-der-waals H8 R 329 8x49 G.H5 E 355 G.H5.22
Hydrophobic ICL3 L 257 - G.S6 Y 325 G.S6.02
Van-der-waals ICL3 L 257 - G.S6 Y 325 G.S6.02
Polar TM3 R 115 3x50 G.H5 N 357 G.H5.24
Hydrophobic TM3 M 118 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 M 118 3x53 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 R 126 34x54 G.H5 L 351 G.H5.18
Van-der-waals ICL2 R 126 34x54 G.H5 L 351 G.H5.18
Hydrophobic H8 R 329 8x49 G.H5 L 358 G.H5.25
Van-der-waals H8 R 329 8x49 G.H5 L 358 G.H5.25
Polar H8 R 329 8x49 G.H5 N 357 G.H5.24
Hydrophobic H8 R 329 8x49 G.H5 N 357 G.H5.24
Van-der-waals H8 R 329 8x49 G.H5 N 357 G.H5.24
Hydrophobic ICL2 R 126 34x54 G.H5 N 352 G.H5.19
Hydrophobic C-term L 388 - G.H3 E 250 G.H3.04
Polar TM3 R 120 3x55 G.H5 K 345 G.H5.12
Van-der-waals TM3 R 120 3x55 G.H5 K 345 G.H5.12
Polar TM5 R 209 5x68 G.H5 Q 350 G.H5.17
Van-der-waals TM5 R 209 5x68 G.H5 Q 350 G.H5.17
Hydrophobic TM3 V 119 3x54 G.H5 L 349 G.H5.16
Hydrophobic TM3 R 115 3x50 G.H5 L 353 G.H5.20
Van-der-waals TM3 R 115 3x50 G.H5 L 353 G.H5.20
Polar H8 R 329 8x49 G.H5 K 354 G.H5.21
Polar TM6 S 262 6x25 G.H5 Q 350 G.H5.17
Hydrophobic TM6 S 262 6x25 G.H5 Q 350 G.H5.17
Van-der-waals TM6 S 262 6x25 G.H5 Q 350 G.H5.17
Hydrophobic TM2 P 47 2x39 G.H5 Y 356 G.H5.23
Hydrophobic TM6 Q 268 6x31 G.H5 V 359 G.H5.26
Hydrophobic ICL2 V 123 34x51 G.S1 L 40 G.S1.02
Hydrophobic ICL3 S 256 - G.h4s6 I 323 G.h4s6.20
Van-der-waals ICL3 S 256 - G.h4s6 I 323 G.h4s6.20
Hydrophobic TM6 V 273 6x36 G.H5 L 358 G.H5.25
Van-der-waals TM6 V 273 6x36 G.H5 L 358 G.H5.25
Hydrophobic ICL2 L 127 34x55 G.S3 V 199 G.S3.01
Hydrophobic C-term L 394 - G.H2 R 214 G.H2.05
Van-der-waals C-term L 394 - G.H2 R 214 G.H2.05
Polar H8 R 329 8x49 G.H5 V 359 G.H5.26
Hydrophobic H8 R 329 8x49 G.H5 V 359 G.H5.26
Van-der-waals H8 R 329 8x49 G.H5 V 359 G.H5.26
Hydrophobic TM6 V 269 6x32 G.H5 V 359 G.H5.26
Hydrophobic TM3 M 118 3x53 G.H5 L 349 G.H5.16
Van-der-waals TM3 M 118 3x53 G.H5 L 349 G.H5.16
Hydrophobic ICL2 V 123 34x51 G.H5 I 348 G.H5.15
Aromatic C-term F 395 - G.H3 Y 261 G.H3.15
Hydrophobic C-term F 395 - G.H3 Y 261 G.H3.15
Van-der-waals C-term F 395 - G.H3 Y 261 G.H3.15
Polar ICL2 P 122 34x50 G.H5 N 352 G.H5.19
Van-der-waals ICL2 P 122 34x50 G.H5 N 352 G.H5.19
Hydrophobic ICL2 L 127 34x55 G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 L 127 34x55 G.hns1 R 37 G.hns1.02
Aromatic ICL2 Y 125 34x53 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 Y 125 34x53 G.H5 Y 356 G.H5.23
Van-der-waals ICL2 Y 125 34x53 G.H5 Y 356 G.H5.23