G13 - GPR21 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 P 134 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 134 34x50 G.H5 I 366 G.H5.15
Ionic TM5 H 221 5x69 G.H5 D 364 G.H5.13
Polar TM5 H 221 5x69 G.H5 D 364 G.H5.13
Hydrophobic TM5 H 221 5x69 G.H5 D 364 G.H5.13
Van-der-waals TM5 H 221 5x69 G.H5 D 364 G.H5.13
Hydrophobic ICL2 L 135 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 135 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM6 Q 243 6x26 G.h4s6 Q 338 G.h4s6.12
Van-der-waals TM6 Q 243 6x26 G.h4s6 Q 338 G.h4s6.12
Hydrophobic TM6 D 247 6x30 G.H5 L 371 G.H5.20
Van-der-waals TM6 D 247 6x30 G.H5 L 371 G.H5.20
Van-der-waals H8 R 313 8x52 G.H5 Q 377 G.H5.26
Polar ICL2 P 134 34x50 G.H5 N 370 G.H5.19
Van-der-waals ICL2 P 134 34x50 G.H5 N 370 G.H5.19
Hydrophobic ICL2 P 134 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 134 34x50 G.H5 K 363 G.H5.12
Polar TM3 R 127 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 127 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 127 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 I 131 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 I 131 3x54 G.H5 L 371 G.H5.20
Polar ICL3 S 234 - G.H4 K 324 G.H4.09
Van-der-waals ICL3 S 234 - G.H4 K 324 G.H4.09
Ionic TM6 D 247 6x30 G.H5 H 368 G.H5.17
Polar TM6 D 247 6x30 G.H5 H 368 G.H5.17
Van-der-waals TM6 D 247 6x30 G.H5 H 368 G.H5.17
Polar H8 S 309 8x48 G.H5 L 376 G.H5.25
Van-der-waals H8 S 309 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM2 I 68 2x43 G.H5 L 376 G.H5.25
Hydrophobic TM5 I 217 5x65 G.H5 L 367 G.H5.16
Polar TM3 R 127 3x50 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 L 135 34x51 G.H5 F 359 G.H5.08
Van-der-waals ICL2 L 135 34x51 G.H5 F 359 G.H5.08
Hydrophobic TM6 P 246 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 P 246 6x29 G.H5 H 368 G.H5.17
Aromatic TM5 F 232 5x80 G.S6 H 344 G.S6.03
Hydrophobic TM5 F 232 5x80 G.S6 H 344 G.S6.03
Van-der-waals TM5 F 232 5x80 G.S6 H 344 G.S6.03
Hydrophobic TM3 I 131 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 I 131 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM7 S 307 7x56 G.H5 M 375 G.H5.24
Polar TM6 Q 243 6x26 G.h4s6 Q 337 G.h4s6.11
Hydrophobic H8 V 310 8x49 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 L 135 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 L 135 34x51 G.S3 V 216 G.S3.01
Polar TM3 A 130 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 130 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 130 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM5 C 218 5x66 G.H5 L 371 G.H5.20
Van-der-waals TM5 C 218 5x66 G.H5 L 371 G.H5.20
Hydrophobic TM5 F 232 5x80 G.S6 F 346 G.S6.05
Van-der-waals TM5 F 232 5x80 G.S6 F 346 G.S6.05
Ionic TM5 R 228 5x76 G.H5 D 364 G.H5.13
Polar TM5 R 228 5x76 G.H5 D 364 G.H5.13
Van-der-waals TM5 R 228 5x76 G.H5 D 364 G.H5.13
Hydrophobic ICL2 N 138 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic TM6 V 253 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 V 253 6x36 G.H5 M 375 G.H5.24
Hydrophobic ICL2 T 136 34x52 G.S3 V 216 G.S3.01
Hydrophobic ICL2 L 135 34x51 G.H5 V 362 G.H5.11
Ionic TM5 R 228 5x76 G.H5 D 361 G.H5.10
Polar TM5 R 228 5x76 G.H5 D 361 G.H5.10
Hydrophobic TM6 Y 250 6x33 G.H5 L 371 G.H5.20
Hydrophobic TM6 L 254 6x37 G.H5 M 375 G.H5.24
Polar TM6 Y 250 6x33 G.H5 Q 377 G.H5.26
Hydrophobic TM6 Y 250 6x33 G.H5 Q 377 G.H5.26
Van-der-waals TM6 Y 250 6x33 G.H5 Q 377 G.H5.26
Hydrophobic TM3 I 131 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 131 3x54 G.H5 L 367 G.H5.16
Hydrophobic TM3 A 130 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 130 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM6 Y 250 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 Y 250 6x33 G.H5 M 375 G.H5.24
Polar TM5 R 231 5x79 G.H4 R 320 G.H4.05
Hydrophobic TM6 Y 250 6x33 G.H5 K 372 G.H5.21
Van-der-waals TM6 Y 250 6x33 G.H5 K 372 G.H5.21
Polar ICL2 T 139 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 T 139 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 T 139 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL1 L 59 12x50 G.H5 L 376 G.H5.25
Polar H8 V 310 8x49 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 135 34x51 G.S1 V 49 G.S1.02
Van-der-waals ICL2 L 135 34x51 G.S1 V 49 G.S1.02
Hydrophobic TM6 L 254 6x37 G.H5 L 374 G.H5.23
Polar ICL2 N 138 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 N 138 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 N 138 34x54 G.hns1 K 46 G.hns1.02
Polar TM2 H 62 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM2 H 62 2x37 G.H5 Q 373 G.H5.22
Van-der-waals TM2 H 62 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM5 R 228 5x76 G.H5 R 360 G.H5.09
Van-der-waals TM5 R 228 5x76 G.H5 R 360 G.H5.09
Hydrophobic H8 N 308 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 N 308 8x47 G.H5 L 376 G.H5.25
Hydrophobic ICL2 P 134 34x50 G.H5 L 367 G.H5.16
Hydrophobic ICL2 L 135 34x51 G.H5 K 363 G.H5.12
Hydrophobic H8 S 309 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 S 309 8x48 G.H5 Q 377 G.H5.26
Hydrophobic TM5 H 221 5x69 G.H5 L 367 G.H5.16
Van-der-waals TM5 H 221 5x69 G.H5 L 367 G.H5.16