Gi1 - GPR21 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 17.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM3 A 130 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 130 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 130 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 135 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 135 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM5 I 225 5x73 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 225 5x73 G.h4s6 E 318 G.h4s6.12
Polar TM6 Q 243 6x26 G.h4s6 D 315 G.h4s6.09
Hydrophobic TM6 Q 243 6x26 G.h4s6 D 315 G.h4s6.09
Van-der-waals TM6 Q 243 6x26 G.h4s6 D 315 G.h4s6.09
Hydrophobic ICL2 P 134 34x50 G.H5 T 340 G.H5.12
Aromatic TM6 Y 250 6x33 G.H5 F 354 G.H5.26
Hydrophobic TM6 Y 250 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 Y 250 6x33 G.H5 F 354 G.H5.26
Ionic TM5 H 221 5x69 G.H5 D 341 G.H5.13
Polar TM5 H 221 5x69 G.H5 D 341 G.H5.13
Hydrophobic TM5 H 221 5x69 G.H5 D 341 G.H5.13
Van-der-waals TM5 H 221 5x69 G.H5 D 341 G.H5.13
Polar ICL3 Q 235 - G.H4 E 297 G.H4.04
Van-der-waals ICL3 Q 235 - G.H4 E 297 G.H4.04
Hydrophobic TM5 C 218 5x66 G.H5 L 348 G.H5.20
Hydrophobic ICL2 T 139 34x55 G.HN E 28 G.HN.52
Hydrophobic ICL3 Q 235 - G.H4 A 301 G.H4.08
Van-der-waals ICL3 Q 235 - G.H4 A 301 G.H4.08
Hydrophobic TM6 V 253 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 134 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 134 34x50 G.H5 I 343 G.H5.15
Ionic TM2 H 62 2x37 G.H5 D 350 G.H5.22
Polar TM2 H 62 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM2 H 62 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 H 62 2x37 G.H5 D 350 G.H5.22
Hydrophobic ICL2 L 135 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 135 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM3 I 131 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM7 S 307 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 S 307 7x56 G.H5 G 352 G.H5.24
Hydrophobic TM6 D 247 6x30 G.H5 F 354 G.H5.26
Van-der-waals TM6 D 247 6x30 G.H5 F 354 G.H5.26
Hydrophobic TM4 T 142 4x38 G.HN E 28 G.HN.52
Van-der-waals TM4 T 142 4x38 G.HN E 28 G.HN.52
Polar H8 N 308 8x47 G.H5 D 350 G.H5.22
Hydrophobic H8 N 308 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM6 Y 250 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 Y 250 6x33 G.H5 L 353 G.H5.25
Polar TM3 R 127 3x50 G.H5 N 347 G.H5.19
Van-der-waals TM3 R 127 3x50 G.H5 N 347 G.H5.19
Hydrophobic TM4 W 144 4x40 G.HN R 24 G.HN.48
Van-der-waals TM4 W 144 4x40 G.HN R 24 G.HN.48
Polar ICL2 T 139 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 T 139 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 T 139 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM5 F 232 5x80 G.S6 T 321 G.S6.03
Polar ICL3 S 236 - G.H4 C 305 G.H4.13
Hydrophobic ICL3 S 236 - G.H4 C 305 G.H4.13
Van-der-waals ICL3 S 236 - G.H4 C 305 G.H4.13
Hydrophobic TM6 P 246 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM5 F 232 5x80 G.H4 Q 304 G.H4.12
Van-der-waals TM5 F 232 5x80 G.H4 Q 304 G.H4.12
Polar TM3 R 127 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 127 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 127 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 I 131 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 131 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 L 254 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 254 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM5 F 232 5x80 G.S6 F 323 G.S6.05
Polar TM4 T 142 4x38 G.HN R 24 G.HN.48
Hydrophobic TM4 T 142 4x38 G.HN R 24 G.HN.48
Van-der-waals TM4 T 142 4x38 G.HN R 24 G.HN.48
Polar ICL2 N 138 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 N 138 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 N 138 34x54 G.hns1 A 31 G.hns1.02
Polar TM3 R 127 3x50 G.H5 D 350 G.H5.22
Hydrophobic TM3 R 127 3x50 G.H5 D 350 G.H5.22
Hydrophobic ICL2 P 134 34x50 G.H5 I 344 G.H5.16
Ionic TM5 R 228 5x76 G.H5 D 341 G.H5.13
Polar TM5 R 228 5x76 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 228 5x76 G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 135 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 135 34x51 G.H5 I 343 G.H5.15