Golf - GPR25 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 78.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 23.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL3 P 233 - G.H5 D 365 G.H5.10
Van-der-waals ICL3 P 233 - G.H5 D 365 G.H5.10
Polar ICL2 R 148 34x54 G.S3 N 205 G.S3.02
Van-der-waals ICL2 R 148 34x54 G.S3 N 205 G.S3.02
Polar TM6 A 238 6x29 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 A 238 6x29 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 A 238 6x29 G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL3 V 235 - G.H5 R 372 G.H5.17
Van-der-waals ICL3 V 235 - G.H5 R 372 G.H5.17
Hydrophobic ICL2 L 145 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 L 145 34x51 G.S3 V 204 G.S3.01
Hydrophobic TM4 P 153 4x39 G.HN L 37 G.HN.52
Hydrophobic ICL2 R 151 34x57 G.H5 L 380 G.H5.25
Van-der-waals ICL2 R 151 34x57 G.H5 L 380 G.H5.25
Polar TM6 R 237 6x28 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 R 237 6x28 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 R 237 6x28 G.h4s6 Y 345 G.h4s6.20
Hydrophobic C-term F 347 - G.H2 R 219 G.H2.05
Polar TM4 R 154 4x40 G.HN Q 33 G.HN.48
Hydrophobic TM4 R 154 4x40 G.HN Q 33 G.HN.48
Van-der-waals TM4 R 154 4x40 G.HN Q 33 G.HN.48
Ionic TM1 R 67 1x60 G.H5 E 379 G.H5.24
Polar TM1 R 67 1x60 G.H5 E 379 G.H5.24
Van-der-waals TM1 R 67 1x60 G.H5 E 379 G.H5.24
Hydrophobic TM6 R 239 6x30 G.H5 L 375 G.H5.20
Van-der-waals TM6 R 239 6x30 G.H5 L 375 G.H5.20
Hydrophobic ICL2 L 144 34x50 G.H5 D 368 G.H5.13
Polar ICL2 R 148 34x54 G.H5 H 374 G.H5.19
Aromatic ICL2 R 148 34x54 G.H5 H 374 G.H5.19
Hydrophobic ICL2 R 148 34x54 G.H5 H 374 G.H5.19
Van-der-waals ICL2 R 148 34x54 G.H5 H 374 G.H5.19
Hydrophobic TM3 R 137 3x50 G.H5 L 381 G.H5.26
Hydrophobic ICL2 R 148 34x54 G.S3 V 204 G.S3.01
Van-der-waals ICL2 R 148 34x54 G.S3 V 204 G.S3.01
Hydrophobic TM6 R 239 6x30 G.H5 L 381 G.H5.26
Van-der-waals TM6 R 239 6x30 G.H5 L 381 G.H5.26
Hydrophobic ICL2 L 145 34x51 G.H5 R 367 G.H5.12
Hydrophobic ICL2 L 144 34x50 G.H5 L 375 G.H5.20
Hydrophobic TM3 A 140 3x53 G.H5 L 375 G.H5.20
Van-der-waals TM3 A 140 3x53 G.H5 L 375 G.H5.20
Hydrophobic ICL3 V 235 - G.S6 Y 347 G.S6.02
Hydrophobic TM4 T 152 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 T 152 4x38 G.HN L 37 G.HN.52
Hydrophobic TM6 R 239 6x30 G.H5 R 372 G.H5.17
Van-der-waals TM6 R 239 6x30 G.H5 R 372 G.H5.17
Hydrophobic C-term F 347 - G.H2 R 218 G.H2.04
Van-der-waals C-term F 347 - G.H2 R 218 G.H2.04
Hydrophobic TM3 V 141 3x54 G.H5 L 381 G.H5.26
Hydrophobic ICL2 R 151 34x57 G.H5 L 375 G.H5.20
Van-der-waals ICL2 R 151 34x57 G.H5 L 375 G.H5.20
Hydrophobic ICL3 H 234 - G.S6 Y 347 G.S6.02
Van-der-waals ICL3 H 234 - G.S6 Y 347 G.S6.02
Hydrophobic ICL2 L 145 34x51 G.H5 Q 371 G.H5.16
Van-der-waals ICL2 L 145 34x51 G.H5 Q 371 G.H5.16
Hydrophobic TM2 V 74 2x39 G.H5 L 380 G.H5.25
Hydrophobic ICL2 L 145 34x51 G.S1 H 43 G.S1.02
Van-der-waals ICL2 L 145 34x51 G.S1 H 43 G.S1.02
Hydrophobic ICL2 L 144 34x50 G.H5 Q 371 G.H5.16
Van-der-waals ICL2 L 144 34x50 G.H5 Q 371 G.H5.16
Polar ICL2 R 148 34x54 G.hns1 A 41 G.hns1.03
Hydrophobic ICL2 R 148 34x54 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 R 148 34x54 G.hns1 A 41 G.hns1.03
Ionic H8 R 317 8x53 G.H5 E 379 G.H5.24
Polar H8 R 317 8x53 G.H5 E 379 G.H5.24
Hydrophobic H8 R 317 8x53 G.H5 E 379 G.H5.24
Van-der-waals H8 R 317 8x53 G.H5 E 379 G.H5.24
Polar ICL2 R 148 34x54 G.S1 H 43 G.S1.02
Aromatic ICL2 R 148 34x54 G.S1 H 43 G.S1.02
Hydrophobic ICL2 R 148 34x54 G.S1 H 43 G.S1.02
Van-der-waals ICL2 R 148 34x54 G.S1 H 43 G.S1.02
Polar ICL2 R 148 34x54 G.S1 T 42 G.S1.01
Hydrophobic ICL2 R 148 34x54 G.S1 T 42 G.S1.01
Van-der-waals ICL2 R 148 34x54 G.S1 T 42 G.S1.01
Hydrophobic TM5 L 229 5x65 G.H5 R 372 G.H5.17
Hydrophobic TM6 A 238 6x29 G.H5 K 376 G.H5.21
Van-der-waals TM6 A 238 6x29 G.H5 K 376 G.H5.21
Hydrophobic TM6 S 242 6x33 G.H5 L 381 G.H5.26
Van-der-waals TM6 S 242 6x33 G.H5 L 381 G.H5.26
Hydrophobic TM2 R 72 2x37 G.H5 L 380 G.H5.25
Polar ICL3 G 236 - G.S6 Y 347 G.S6.02
Hydrophobic ICL3 G 236 - G.S6 Y 347 G.S6.02
Van-der-waals ICL3 G 236 - G.S6 Y 347 G.S6.02
Polar TM5 R 228 5x64 G.H5 R 372 G.H5.17
Ionic TM2 R 72 2x37 G.H5 E 379 G.H5.24
Polar TM2 R 72 2x37 G.H5 E 379 G.H5.24
Hydrophobic TM2 R 72 2x37 G.H5 E 379 G.H5.24
Van-der-waals TM2 R 72 2x37 G.H5 E 379 G.H5.24
Hydrophobic ICL3 P 233 - G.H5 I 369 G.H5.14
Polar TM2 R 72 2x37 G.H5 L 381 G.H5.26
Van-der-waals TM2 R 72 2x37 G.H5 L 381 G.H5.26
Hydrophobic TM2 L 73 2x38 G.H5 L 380 G.H5.25
Van-der-waals TM2 L 73 2x38 G.H5 L 380 G.H5.25
Hydrophobic ICL2 L 145 34x51 G.S3 F 206 G.S3.03
Ionic TM5 R 228 5x64 G.H5 D 368 G.H5.13
Polar TM5 R 228 5x64 G.H5 D 368 G.H5.13
Hydrophobic TM5 R 228 5x64 G.H5 D 368 G.H5.13
Van-der-waals TM5 R 228 5x64 G.H5 D 368 G.H5.13
Hydrophobic ICL3 G 236 - G.h4s6 Y 345 G.h4s6.20
Polar ICL2 R 148 34x54 G.hns1 K 40 G.hns1.02