G13 - GPR35 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.1

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 P 121 34x50 G.H5 L 367 G.H5.16
Hydrophobic TM7 M 279 7x56 G.H5 L 374 G.H5.23
Van-der-waals TM7 M 279 7x56 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 114 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 114 3x50 G.H5 L 374 G.H5.23
Polar ICL2 R 125 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 R 125 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 R 125 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic ICL1 M 49 12x48 G.H5 L 376 G.H5.25
Hydrophobic TM6 A 211 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 A 211 6x29 G.H5 M 375 G.H5.24
Hydrophobic TM5 L 198 5x65 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 198 5x65 G.H5 L 371 G.H5.20
Hydrophobic TM5 R 201 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 R 201 5x68 G.H5 L 367 G.H5.16
Hydrophobic ICL2 L 122 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 122 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 A 117 3x53 G.H5 L 374 G.H5.23
Hydrophobic ICL2 R 125 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic H8 A 280 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 A 280 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 E 282 8x49 G.H5 L 376 G.H5.25
Hydrophobic TM3 V 118 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM4 S 129 4x38 G.hns1 K 46 G.hns1.02
Hydrophobic TM1 F 45 1x57 G.H5 L 376 G.H5.25
Van-der-waals TM1 F 45 1x57 G.H5 L 376 G.H5.25
Hydrophobic TM6 M 218 6x36 G.H5 L 374 G.H5.23
Hydrophobic TM2 T 55 2x39 G.H5 L 376 G.H5.25
Hydrophobic TM3 V 118 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 118 3x54 G.H5 L 367 G.H5.16
Polar H8 A 280 8x47 G.H5 M 375 G.H5.24
Hydrophobic TM7 M 279 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 M 279 7x56 G.H5 M 375 G.H5.24
Polar ICL2 G 126 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 G 126 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 G 126 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 L 122 34x51 G.S1 V 49 G.S1.02
Polar TM2 T 55 2x39 G.H5 Q 373 G.H5.22
Hydrophobic TM6 Q 208 6x26 G.h4s6 P 341 G.h4s6.20
Van-der-waals TM6 Q 208 6x26 G.h4s6 P 341 G.h4s6.20
Polar ICL2 R 125 34x54 G.h2s4 T 241 G.h2s4.05
Hydrophobic ICL2 R 125 34x54 G.h2s4 T 241 G.h2s4.05
Van-der-waals ICL2 R 125 34x54 G.h2s4 T 241 G.h2s4.05
Hydrophobic TM6 A 211 6x29 G.H5 H 368 G.H5.17
Ionic TM5 R 201 5x68 G.H5 D 364 G.H5.13
Polar TM5 R 201 5x68 G.H5 D 364 G.H5.13
Hydrophobic ICL2 P 121 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 121 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL2 L 122 34x51 G.H5 V 362 G.H5.11
Hydrophobic TM2 T 53 2x37 G.H5 Q 373 G.H5.22
Polar ICL2 R 128 34x57 G.H5 Q 373 G.H5.22
Hydrophobic TM7 M 279 7x56 G.H5 L 376 G.H5.25
Polar ICL2 R 125 34x54 G.S1 L 48 G.S1.01
Van-der-waals ICL2 R 125 34x54 G.S1 L 48 G.S1.01
Hydrophobic ICL2 L 122 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM3 V 118 3x54 G.H5 L 374 G.H5.23
Hydrophobic ICL2 R 125 34x54 G.H5 I 366 G.H5.15
Polar TM6 Q 208 6x26 G.S6 Y 343 G.S6.02
Van-der-waals TM6 K 214 6x32 G.H5 Q 377 G.H5.26
Polar ICL2 R 128 34x57 G.H5 N 370 G.H5.19
Hydrophobic ICL2 P 121 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 121 34x50 G.H5 I 366 G.H5.15
Polar TM6 Q 208 6x26 G.H5 D 364 G.H5.13
Hydrophobic TM6 K 214 6x32 G.H5 M 375 G.H5.24
Van-der-waals TM6 K 214 6x32 G.H5 M 375 G.H5.24
Hydrophobic TM6 Q 208 6x26 G.H5 H 368 G.H5.17
Hydrophobic TM6 M 218 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 M 218 6x36 G.H5 M 375 G.H5.24
Hydrophobic ICL2 L 122 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 L 122 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM2 M 59 2x43 G.H5 L 376 G.H5.25
Van-der-waals TM2 M 59 2x43 G.H5 L 376 G.H5.25
Polar TM7 M 279 7x56 G.H5 Q 377 G.H5.26
Hydrophobic TM2 T 55 2x39 G.H5 L 374 G.H5.23
Hydrophobic ICL3 T 204 - G.S6 Y 343 G.S6.02
Hydrophobic ICL2 L 122 34x51 G.H5 F 359 G.H5.08
Van-der-waals ICL2 L 122 34x51 G.H5 F 359 G.H5.08
Hydrophobic TM6 A 215 6x33 G.H5 M 375 G.H5.24
Hydrophobic TM6 A 215 6x33 G.H5 L 371 G.H5.20
Polar TM3 A 117 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 117 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 117 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM2 R 56 2x40 G.H5 L 376 G.H5.25