Gs - GPR52 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 I 237 5x73 G.H5 R 385 G.H5.17
Polar H8 S 322 8x48 G.H5 E 392 G.H5.24
Van-der-waals H8 S 322 8x48 G.H5 E 392 G.H5.24
Hydrophobic TM7 S 320 7x56 G.H5 E 392 G.H5.24
Van-der-waals TM7 S 320 7x56 G.H5 E 392 G.H5.24
Hydrophobic TM3 A 142 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 A 142 3x53 G.H5 Y 391 G.H5.23
Hydrophobic TM5 I 226 5x62 G.H5 L 393 G.H5.25
Van-der-waals TM5 I 226 5x62 G.H5 L 393 G.H5.25
Polar TM5 R 240 5x76 G.S6 C 359 G.S6.01
Van-der-waals TM5 R 240 5x76 G.S6 C 359 G.S6.01
Hydrophobic ICL3 V 249 - G.h4s6 G 353 G.h4s6.09
Polar TM3 I 143 3x54 G.H5 Q 384 G.H5.16
Hydrophobic TM3 I 143 3x54 G.H5 Q 384 G.H5.16
Van-der-waals TM3 I 143 3x54 G.H5 Q 384 G.H5.16
Polar ICL2 Q 151 34x55 G.s2s3 K 216 G.s2s3.02
Van-der-waals ICL2 Q 151 34x55 G.s2s3 K 216 G.s2s3.02
Hydrophobic TM5 F 244 5x80 G.H4 L 346 G.H4.16
Van-der-waals TM5 F 244 5x80 G.H4 L 346 G.H4.16
Aromatic TM5 R 240 5x76 G.S6 Y 360 G.S6.02
Hydrophobic TM4 T 154 4x38 G.HN Q 35 G.HN.52
Van-der-waals TM4 T 154 4x38 G.HN Q 35 G.HN.52
Hydrophobic TM5 I 237 5x73 G.H5 L 394 G.H5.26
Polar TM5 F 244 5x80 G.h4s6 T 350 G.h4s6.03
Hydrophobic TM5 F 244 5x80 G.h4s6 T 350 G.h4s6.03
Van-der-waals TM5 F 244 5x80 G.h4s6 T 350 G.h4s6.03
Polar ICL3 S 246 - G.h4s6 T 350 G.h4s6.03
Hydrophobic ICL3 S 246 - G.h4s6 T 350 G.h4s6.03
Hydrophobic TM3 I 143 3x54 G.H5 L 388 G.H5.20
Van-der-waals TM3 I 143 3x54 G.H5 L 388 G.H5.20
Hydrophobic TM6 Y 263 6x33 G.H5 E 392 G.H5.24
Van-der-waals TM6 Y 263 6x33 G.H5 E 392 G.H5.24
Hydrophobic ICL2 P 146 34x50 G.H5 R 380 G.H5.12
Van-der-waals ICL2 P 146 34x50 G.H5 R 380 G.H5.12
Hydrophobic TM6 V 266 6x36 G.H5 L 393 G.H5.25
Polar TM3 A 142 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM3 A 142 3x53 G.H5 H 387 G.H5.19
Van-der-waals TM3 A 142 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM5 I 237 5x73 G.h4s6 Y 358 G.h4s6.20
Van-der-waals TM5 I 237 5x73 G.h4s6 Y 358 G.h4s6.20
Hydrophobic ICL2 L 147 34x51 G.S3 V 217 G.S3.01
Hydrophobic ICL2 L 147 34x51 G.S3 F 219 G.S3.03
Hydrophobic ICL2 N 150 34x54 G.hns1 A 39 G.hns1.03
Polar ICL2 N 150 34x54 G.hns1 R 38 G.hns1.02
Hydrophobic ICL2 N 150 34x54 G.hns1 R 38 G.hns1.02
Van-der-waals ICL2 N 150 34x54 G.hns1 R 38 G.hns1.02
Aromatic TM3 R 139 3x50 G.H5 Y 391 G.H5.23
Hydrophobic TM3 R 139 3x50 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 L 147 34x51 G.H5 I 383 G.H5.15
Van-der-waals ICL2 L 147 34x51 G.H5 I 383 G.H5.15
Hydrophobic ICL2 L 147 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL2 L 147 34x51 G.H5 F 376 G.H5.08
Ionic TM5 R 243 5x79 G.hgh4 D 323 G.hgh4.13
Polar TM5 R 243 5x79 G.hgh4 D 323 G.hgh4.13
Hydrophobic TM5 R 243 5x79 G.hgh4 D 323 G.hgh4.13
Van-der-waals TM5 R 243 5x79 G.hgh4 D 323 G.hgh4.13
Hydrophobic TM5 H 233 5x69 G.H5 L 388 G.H5.20
Polar TM6 Y 263 6x33 G.H5 L 394 G.H5.26
Hydrophobic TM6 Y 263 6x33 G.H5 L 394 G.H5.26
Van-der-waals TM6 Y 263 6x33 G.H5 L 394 G.H5.26
Polar ICL1 H 73 12x52 G.HN K 34 G.HN.51
Hydrophobic ICL1 H 73 12x52 G.HN K 34 G.HN.51
Van-der-waals ICL1 H 73 12x52 G.HN K 34 G.HN.51
Polar ICL2 Q 151 34x55 G.hns1 A 39 G.hns1.03
Hydrophobic ICL2 Q 151 34x55 G.hns1 A 39 G.hns1.03
Van-der-waals ICL2 Q 151 34x55 G.hns1 A 39 G.hns1.03
Polar TM5 H 233 5x69 G.H5 R 385 G.H5.17
Hydrophobic TM5 H 233 5x69 G.H5 R 385 G.H5.17
Van-der-waals TM5 H 233 5x69 G.H5 R 385 G.H5.17
Hydrophobic ICL2 Y 149 34x53 G.H5 H 387 G.H5.19
Ionic TM6 R 262 6x32 G.H5 E 392 G.H5.24
Hydrophobic ICL2 P 146 34x50 G.H5 I 383 G.H5.15
Van-der-waals ICL2 P 146 34x50 G.H5 I 383 G.H5.15
Hydrophobic ICL2 L 147 34x51 G.H5 R 380 G.H5.12
Hydrophobic TM5 F 244 5x80 G.H4 D 343 G.H4.13
Hydrophobic ICL2 L 147 34x51 G.H5 C 379 G.H5.11
Ionic TM5 E 236 5x72 G.H5 R 385 G.H5.17
Polar TM5 E 236 5x72 G.H5 R 385 G.H5.17
Van-der-waals TM5 E 236 5x72 G.H5 R 385 G.H5.17
Hydrophobic H8 N 321 8x47 G.H5 E 392 G.H5.24
Ionic TM5 H 233 5x69 G.H5 D 381 G.H5.13
Polar TM5 H 233 5x69 G.H5 D 381 G.H5.13
Hydrophobic TM5 H 233 5x69 G.H5 D 381 G.H5.13
Van-der-waals TM5 H 233 5x69 G.H5 D 381 G.H5.13
Hydrophobic TM5 I 229 5x65 G.H5 L 388 G.H5.20
Hydrophobic TM5 I 226 5x62 G.H5 L 388 G.H5.20
Hydrophobic ICL3 S 246 - G.h4s6 A 351 G.h4s6.04
Hydrophobic TM3 I 143 3x54 G.H5 H 387 G.H5.19
Hydrophobic TM6 Y 263 6x33 G.H5 L 393 G.H5.25
Van-der-waals TM6 Y 263 6x33 G.H5 L 393 G.H5.25
Polar ICL2 L 147 34x51 G.S1 H 41 G.S1.02
Hydrophobic ICL2 L 147 34x51 G.S1 H 41 G.S1.02
Van-der-waals ICL2 L 147 34x51 G.S1 H 41 G.S1.02
Polar TM5 H 233 5x69 G.H5 Q 384 G.H5.16
Hydrophobic TM5 H 233 5x69 G.H5 Q 384 G.H5.16
Van-der-waals TM5 H 233 5x69 G.H5 Q 384 G.H5.16
Hydrophobic TM5 I 229 5x65 G.H5 Q 384 G.H5.16
Van-der-waals TM5 I 229 5x65 G.H5 Q 384 G.H5.16
Hydrophobic TM5 H 233 5x69 G.H5 L 394 G.H5.26
Hydrophobic TM6 L 267 6x37 G.H5 L 393 G.H5.25
Van-der-waals TM6 L 267 6x37 G.H5 L 393 G.H5.25
Polar TM5 R 241 5x77 G.h4s6 G 353 G.h4s6.09
Van-der-waals TM5 R 241 5x77 G.h4s6 G 353 G.h4s6.09
Ionic H8 R 325 8x51 G.H5 E 392 G.H5.24
Polar H8 R 325 8x51 G.H5 E 392 G.H5.24
Hydrophobic ICL2 P 146 34x50 G.H5 Q 384 G.H5.16
Hydrophobic TM5 C 230 5x66 G.H5 L 388 G.H5.20
Hydrophobic TM3 I 143 3x54 G.H5 Y 391 G.H5.23
Polar ICL1 H 73 12x52 G.hns1 R 38 G.hns1.02
Hydrophobic ICL1 H 73 12x52 G.hns1 R 38 G.hns1.02
Van-der-waals ICL1 H 73 12x52 G.hns1 R 38 G.hns1.02
Hydrophobic TM2 Y 74 2x37 G.H5 Q 390 G.H5.22
Van-der-waals TM2 Y 74 2x37 G.H5 Q 390 G.H5.22
Polar TM5 C 230 5x66 G.H5 L 393 G.H5.25
Hydrophobic TM5 C 230 5x66 G.H5 L 393 G.H5.25
Van-der-waals TM5 C 230 5x66 G.H5 L 393 G.H5.25
Hydrophobic ICL2 P 146 34x50 G.H5 H 387 G.H5.19