Ggust - GPR75 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 70.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 19.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 K 315 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 315 6x29 G.H5 F 354 G.H5.26
Hydrophobic C-term V 540 - G.h1ha K 58 G.h1ha.01
Van-der-waals C-term V 540 - G.h1ha K 58 G.h1ha.01
Hydrophobic C-term Y 486 - G.H2 I 212 G.H2.08
Hydrophobic C-term N 510 - H.hbhc D 116 H.hbhc.04
Van-der-waals C-term N 510 - H.hbhc D 116 H.hbhc.04
Polar TM3 R 143 3x50 G.H5 G 352 G.H5.24
Hydrophobic TM3 R 143 3x50 G.H5 G 352 G.H5.24
Van-der-waals TM3 R 143 3x50 G.H5 G 352 G.H5.24
Hydrophobic C-term F 508 - H.HB N 112 H.HB.14
Van-der-waals C-term F 508 - H.HB N 112 H.HB.14
Hydrophobic TM6 L 311 6x25 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 L 311 6x25 G.h4s6 E 318 G.h4s6.12
Polar TM3 R 143 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 143 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 143 3x50 G.H5 C 351 G.H5.23
Hydrophobic C-term I 535 - H.HA V 72 H.HA.10
Van-der-waals C-term I 535 - H.HA V 72 H.HA.10
Polar ICL2 T 155 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 T 155 - G.hns1 R 32 G.hns1.03
Hydrophobic TM7 Y 376 7x53 G.H5 G 352 G.H5.24
Hydrophobic C-term I 513 - G.hfs2 V 179 G.hfs2.03
Polar C-term Y 512 - G.hfs2 K 180 G.hfs2.04
Hydrophobic C-term Y 512 - G.hfs2 K 180 G.hfs2.04
Van-der-waals C-term Y 512 - G.hfs2 K 180 G.hfs2.04
Polar ICL3 Q 304 - G.S6 M 323 G.S6.05
Hydrophobic ICL3 Q 304 - G.S6 M 323 G.S6.05
Van-der-waals ICL3 Q 304 - G.S6 M 323 G.S6.05
Hydrophobic TM7 S 377 7x54 G.H5 G 352 G.H5.24
Van-der-waals TM6 K 318 6x32 G.H5 F 354 G.H5.26
Hydrophobic C-term Y 512 - H.HA A 71 H.HA.09
Polar ICL2 N 153 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 N 153 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 N 153 - G.hns1 R 32 G.hns1.03
Hydrophobic TM2 F 79 2x39 G.H5 G 352 G.H5.24
Hydrophobic TM3 R 143 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL1 K 74 12x49 G.h2s4 G 217 G.h2s4.03
Hydrophobic TM5 I 225 5x61 G.H5 L 353 G.H5.25
Hydrophobic C-term S 511 - G.hfs2 K 180 G.hfs2.04
Hydrophobic ICL1 F 75 12x50 G.h2s4 V 218 G.h2s4.04
Van-der-waals ICL1 F 75 12x50 G.h2s4 V 218 G.h2s4.04
Hydrophobic TM3 H 142 3x49 G.H5 C 351 G.H5.23
Hydrophobic C-term I 535 - G.hfs2 V 179 G.hfs2.03
Van-der-waals C-term I 535 - G.hfs2 V 179 G.hfs2.03
Ionic TM5 R 236 5x72 G.H5 D 341 G.H5.13
Polar TM5 R 236 5x72 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 236 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM6 C 323 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 C 323 6x37 G.H5 L 353 G.H5.25
Polar C-term Y 512 - H.hbhc D 116 H.hbhc.04
Hydrophobic C-term Y 512 - H.hbhc D 116 H.hbhc.04
Van-der-waals C-term Y 512 - H.hbhc D 116 H.hbhc.04
Polar C-term M 515 - G.hfs2 T 182 G.hfs2.06
Van-der-waals C-term M 515 - G.hfs2 T 182 G.hfs2.06
Polar ICL2 T 155 - G.HN E 28 G.HN.52
Hydrophobic ICL2 T 155 - G.HN E 28 G.HN.52
Van-der-waals ICL2 T 155 - G.HN E 28 G.HN.52
Ionic TM6 K 315 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 315 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 K 315 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 315 6x29 G.h4s6 E 318 G.h4s6.12
Polar C-term A 514 - G.hfs2 T 182 G.hfs2.06
Van-der-waals C-term A 514 - G.hfs2 T 182 G.hfs2.06
Polar ICL2 A 156 - G.HN E 28 G.HN.52
Hydrophobic ICL2 A 156 - G.HN E 28 G.HN.52
Van-der-waals ICL2 A 156 - G.HN E 28 G.HN.52
Aromatic ICL1 K 74 12x49 G.H3 Y 258 G.H3.17
Ionic ICL2 R 154 - G.HN E 28 G.HN.52
Polar ICL2 R 154 - G.HN E 28 G.HN.52
Hydrophobic ICL2 R 154 - G.HN E 28 G.HN.52
Van-der-waals ICL2 R 154 - G.HN E 28 G.HN.52
Polar TM4 S 157 4x38 G.HN E 28 G.HN.52
Hydrophobic TM4 S 157 4x38 G.HN E 28 G.HN.52
Hydrophobic C-term V 540 - G.S2 Q 188 G.S2.05
Hydrophobic C-term I 513 - G.hfs2 K 180 G.hfs2.04
Van-der-waals C-term I 513 - G.hfs2 K 180 G.hfs2.04
Hydrophobic C-term A 514 - G.S2 I 185 G.S2.02
Hydrophobic C-term F 508 - H.HB A 111 H.HB.13
Polar TM6 T 322 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 322 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 322 6x36 G.H5 L 353 G.H5.25
Polar ICL2 P 152 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 P 152 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 P 152 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL1 F 75 12x50 G.h2s4 T 219 G.h2s4.05
Ionic C-term K 533 - H.hbhc E 115 H.hbhc.03
Polar C-term K 533 - H.hbhc E 115 H.hbhc.03
Van-der-waals C-term K 533 - H.hbhc E 115 H.hbhc.03
Hydrophobic TM7 R 378 7x55 G.H5 G 352 G.H5.24
Polar ICL1 K 74 12x49 G.h2s4 F 215 G.h2s4.01
Van-der-waals ICL1 K 74 12x49 G.h2s4 F 215 G.h2s4.01
Ionic TM7 R 378 7x55 G.H5 D 350 G.H5.22
Polar TM7 R 378 7x55 G.H5 D 350 G.H5.22
Hydrophobic TM7 R 378 7x55 G.H5 D 350 G.H5.22
Van-der-waals TM7 R 378 7x55 G.H5 D 350 G.H5.22
Hydrophobic TM2 F 79 2x39 G.H5 D 350 G.H5.22
Van-der-waals TM2 F 79 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM5 Y 222 5x58 G.H5 L 353 G.H5.25
Hydrophobic TM3 M 146 3x53 G.H5 L 348 G.H5.20
Van-der-waals TM3 M 146 3x53 G.H5 L 348 G.H5.20
Polar C-term H 516 - G.S2 I 184 G.S2.01
Hydrophobic C-term H 516 - G.S2 I 184 G.S2.01
Van-der-waals C-term H 516 - G.S2 I 184 G.S2.01
Polar TM6 S 312 6x26 G.H5 K 345 G.H5.17
Van-der-waals TM6 S 312 6x26 G.H5 K 345 G.H5.17
Hydrophobic TM6 A 319 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 A 319 6x33 G.H5 F 354 G.H5.26
Ionic ICL1 K 74 12x49 G.h2s4 E 216 G.h2s4.02
Polar ICL1 K 74 12x49 G.h2s4 E 216 G.h2s4.02
Hydrophobic ICL1 K 74 12x49 G.h2s4 E 216 G.h2s4.02
Van-der-waals ICL1 K 74 12x49 G.h2s4 E 216 G.h2s4.02
Hydrophobic C-term Y 486 - G.H3 Y 258 G.H3.17
Van-der-waals C-term Y 486 - G.H3 Y 258 G.H3.17
Hydrophobic TM3 M 146 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 T 155 - G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 T 155 - G.hns1 A 31 G.hns1.02
Ionic TM6 K 315 6x29 G.H5 E 346 G.H5.18
Polar TM6 K 315 6x29 G.H5 E 346 G.H5.18
Hydrophobic TM3 V 147 3x54 G.H5 L 353 G.H5.25
Hydrophobic C-term I 485 - G.H3 I 253 G.H3.12
Polar ICL2 Q 151 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 Q 151 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 Q 151 - G.hns1 R 32 G.hns1.03
Hydrophobic C-term A 514 - G.hfs2 V 179 G.hfs2.03
Hydrophobic ICL2 Q 151 - G.S3 L 194 G.S3.01
Ionic TM6 D 316 6x30 G.H5 K 345 G.H5.17
Polar TM6 D 316 6x30 G.H5 K 345 G.H5.17
Hydrophobic TM6 D 316 6x30 G.H5 K 345 G.H5.17
Van-der-waals TM6 D 316 6x30 G.H5 K 345 G.H5.17
Hydrophobic TM3 M 146 3x53 G.H5 N 347 G.H5.19
Polar H8 S 380 8x47 G.H5 F 354 G.H5.26
Hydrophobic C-term Y 486 - G.H3 K 257 G.H3.16
Hydrophobic C-term A 514 - G.hfs2 T 181 G.hfs2.05
Hydrophobic C-term F 508 - H.HA L 82 H.HA.20
Hydrophobic ICL1 F 75 12x50 G.h2s4 G 217 G.h2s4.03
Hydrophobic ICL2 Q 151 - G.s2s3 D 193 G.s2s3.02
Hydrophobic TM2 F 79 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 F 79 2x39 G.H5 C 351 G.H5.23
Hydrophobic C-term H 516 - G.S2 I 185 G.S2.02
Van-der-waals C-term H 516 - G.S2 I 185 G.S2.02
Polar TM6 K 315 6x29 G.S6 Y 320 G.S6.02
Van-der-waals TM6 K 315 6x29 G.S6 Y 320 G.S6.02
Hydrophobic C-term Y 512 - H.HA V 72 H.HA.10
Hydrophobic C-term Y 512 - G.hfs2 V 179 G.hfs2.03
Van-der-waals C-term Y 512 - G.hfs2 V 179 G.hfs2.03
Aromatic C-term Y 483 - G.H2 R 205 G.H2.01
Polar H8 R 384 8x51 G.H5 F 354 G.H5.26
Hydrophobic ICL1 F 72 - G.h3s5 T 261 G.h3s5.02
Van-der-waals TM7 I 375 7x52 G.H5 G 352 G.H5.24
Hydrophobic C-term P 538 - G.H1 K 54 G.H1.09
Polar C-term Y 512 - H.hbhc G 117 H.hbhc.12
Hydrophobic C-term I 513 - G.hfs2 T 182 G.hfs2.06
Van-der-waals C-term I 513 - G.hfs2 T 182 G.hfs2.06
Hydrophobic C-term P 536 - H.HA E 68 H.HA.06
Van-der-waals C-term P 536 - H.HA E 68 H.HA.06
Polar C-term A 514 - G.hfs2 K 180 G.hfs2.04
Van-der-waals C-term A 514 - G.hfs2 K 180 G.hfs2.04
Hydrophobic TM3 V 147 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 147 3x54 G.H5 L 348 G.H5.20
Ionic H8 R 385 8x52 G.h4s6 D 316 G.h4s6.10
Polar H8 R 385 8x52 G.h4s6 D 316 G.h4s6.10
Hydrophobic H8 R 385 8x52 G.h4s6 D 316 G.h4s6.10
Van-der-waals H8 R 385 8x52 G.h4s6 D 316 G.h4s6.10
Hydrophobic C-term I 485 - G.H3 S 252 G.H3.11
Van-der-waals C-term I 485 - G.H3 S 252 G.H3.11
Hydrophobic C-term Y 512 - H.HA S 75 H.HA.13
Van-der-waals C-term Y 512 - H.HA S 75 H.HA.13
Ionic H8 R 385 8x52 G.h4s6 E 315 G.h4s6.09
Polar H8 R 385 8x52 G.h4s6 E 315 G.h4s6.09
Van-der-waals H8 R 385 8x52 G.h4s6 E 315 G.h4s6.09
Hydrophobic C-term F 508 - H.HB Y 108 H.HB.10
Polar C-term H 516 - G.hfs2 T 182 G.hfs2.06
Ionic ICL2 R 154 - G.HN E 25 G.HN.49
Polar ICL2 R 154 - G.HN E 25 G.HN.49
Hydrophobic ICL2 R 154 - G.HN E 25 G.HN.49
Van-der-waals ICL2 R 154 - G.HN E 25 G.HN.49
Polar C-term Y 486 - G.H3 H 256 G.H3.15
Hydrophobic C-term Y 486 - G.H3 H 256 G.H3.15
Van-der-waals C-term Y 486 - G.H3 H 256 G.H3.15
Hydrophobic ICL3 L 305 - G.H5 F 334 G.H5.06
Van-der-waals ICL3 L 305 - G.H5 F 334 G.H5.06
Hydrophobic TM4 S 157 4x38 G.HN A 27 G.HN.51
Hydrophobic TM6 K 315 6x29 G.H5 K 345 G.H5.17
Van-der-waals TM6 K 315 6x29 G.H5 K 345 G.H5.17
Hydrophobic TM6 K 315 6x29 G.H5 K 349 G.H5.21
Polar C-term F 508 - H.HA Q 79 H.HA.17
Van-der-waals C-term F 508 - H.HA Q 79 H.HA.17
Polar TM4 S 157 4x38 G.HN Q 24 G.HN.48
Hydrophobic TM4 S 157 4x38 G.HN Q 24 G.HN.48
Van-der-waals TM4 S 157 4x38 G.HN Q 24 G.HN.48