G12 - OR51F1 complex model

GPCR CLASS (FAMILY)

O1 (fish-like odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 81.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 16.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM3 C 136 3x55 G.H5 K 367 G.H5.12
Hydrophobic ICL2 L 139 34x51 G.H5 I 370 G.H5.15
Van-der-waals ICL2 L 139 34x51 G.H5 I 370 G.H5.15
Hydrophobic ICL2 R 140 34x52 G.S3 I 221 G.S3.01
Van-der-waals ICL2 R 140 34x52 G.S3 I 221 G.S3.01
Hydrophobic ICL2 Y 141 34x53 G.H5 N 374 G.H5.19
Van-der-waals TM6 S 248 6x35 G.H5 M 379 G.H5.24
Hydrophobic TM7 D 301 7x53 G.H5 L 380 G.H5.25
Hydrophobic ICL2 T 143 34x55 G.hns1 R 56 G.hns1.03
Van-der-waals ICL2 T 143 34x55 G.hns1 R 56 G.hns1.03
Hydrophobic ICL2 L 139 34x51 G.H5 V 366 G.H5.11
Polar ICL2 P 138 34x50 G.H5 N 374 G.H5.19
Hydrophobic ICL2 P 138 34x50 G.H5 N 374 G.H5.19
Van-der-waals ICL2 P 138 34x50 G.H5 N 374 G.H5.19
Hydrophobic ICL2 R 140 34x52 G.s2s3 K 220 G.s2s3.02
Hydrophobic ICL1 Q 62 12x48 G.HN D 44 G.HN.44
Van-der-waals ICL1 Q 62 12x48 G.HN D 44 G.HN.44
Hydrophobic ICL2 L 139 34x51 G.S1 V 58 G.S1.02
Hydrophobic TM3 I 135 3x54 G.H5 L 375 G.H5.20
Polar H8 K 306 8x48 G.H5 L 380 G.H5.25
Polar TM3 A 134 3x53 G.H5 N 374 G.H5.19
Hydrophobic TM3 A 134 3x53 G.H5 N 374 G.H5.19
Van-der-waals TM3 A 134 3x53 G.H5 N 374 G.H5.19
Hydrophobic ICL2 P 138 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 P 138 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 L 139 34x51 G.H5 K 367 G.H5.12
Polar TM6 E 242 6x29 G.H5 Q 372 G.H5.17
Hydrophobic TM6 E 242 6x29 G.H5 Q 372 G.H5.17
Van-der-waals TM6 E 242 6x29 G.H5 Q 372 G.H5.17
Polar TM4 N 147 4x39 G.HN R 52 G.HN.52
Hydrophobic TM4 N 147 4x39 G.HN R 52 G.HN.52
Van-der-waals TM4 N 147 4x39 G.HN R 52 G.HN.52
Hydrophobic TM2 M 68 2x39 G.H5 I 378 G.H5.23
Van-der-waals TM2 M 68 2x39 G.H5 I 378 G.H5.23
Hydrophobic TM6 K 245 6x32 G.H5 L 375 G.H5.20
Ionic TM2 E 66 2x37 G.hns1 R 55 G.hns1.02
Polar TM2 E 66 2x37 G.hns1 R 55 G.hns1.02
Hydrophobic TM2 E 66 2x37 G.hns1 R 55 G.hns1.02
Van-der-waals TM2 E 66 2x37 G.hns1 R 55 G.hns1.02
Hydrophobic TM5 I 237 5x68 G.H5 L 371 G.H5.16
Van-der-waals TM5 I 237 5x68 G.H5 L 371 G.H5.16
Hydrophobic TM6 T 249 6x36 G.H5 M 379 G.H5.24
Van-der-waals TM6 T 249 6x36 G.H5 M 379 G.H5.24
Polar TM6 K 245 6x32 G.H5 Q 372 G.H5.17
Van-der-waals TM6 K 245 6x32 G.H5 Q 372 G.H5.17
Hydrophobic ICL2 P 138 34x50 G.H5 K 367 G.H5.12
Van-der-waals ICL2 P 138 34x50 G.H5 K 367 G.H5.12
Hydrophobic TM6 V 246 6x33 G.H5 L 375 G.H5.20
Van-der-waals TM6 V 246 6x33 G.H5 L 375 G.H5.20
Hydrophobic TM6 T 249 6x36 G.H5 I 378 G.H5.23
Van-der-waals TM6 T 249 6x36 G.H5 I 378 G.H5.23
Hydrophobic TM3 I 135 3x54 G.H5 L 371 G.H5.16
Van-der-waals TM3 I 135 3x54 G.H5 L 371 G.H5.16
Polar ICL2 R 140 34x52 G.s2s3 K 219 G.s2s3.01
Van-der-waals ICL2 R 140 34x52 G.s2s3 K 219 G.s2s3.01
Hydrophobic ICL2 P 138 34x50 G.H5 L 371 G.H5.16
Hydrophobic TM4 T 146 4x38 G.hns1 R 56 G.hns1.03
Van-der-waals TM4 T 146 4x38 G.hns1 R 56 G.hns1.03
Polar ICL2 T 142 34x54 G.hns1 R 56 G.hns1.03
Hydrophobic ICL2 T 142 34x54 G.hns1 R 56 G.hns1.03
Van-der-waals ICL2 T 142 34x54 G.hns1 R 56 G.hns1.03
Hydrophobic ICL2 L 139 34x51 G.S3 F 223 G.S3.03
Hydrophobic TM3 A 134 3x53 G.H5 L 371 G.H5.16
Polar H8 T 305 8x47 G.H5 L 380 G.H5.25
Hydrophobic H8 T 305 8x47 G.H5 L 380 G.H5.25
Van-der-waals H8 T 305 8x47 G.H5 L 380 G.H5.25
Hydrophobic ICL2 L 139 34x51 G.H5 F 363 G.H5.08
Van-der-waals ICL2 L 139 34x51 G.H5 F 363 G.H5.08
Hydrophobic TM2 L 72 2x43 G.H5 L 380 G.H5.25
Van-der-waals TM2 L 72 2x43 G.H5 L 380 G.H5.25
Polar ICL1 H 65 12x51 G.HN R 52 G.HN.52
Van-der-waals ICL1 H 65 12x51 G.HN R 52 G.HN.52
Hydrophobic TM3 R 131 3x50 G.H5 I 378 G.H5.23
Van-der-waals TM3 R 131 3x50 G.H5 I 378 G.H5.23
Polar ICL2 T 142 34x54 G.hns1 R 55 G.hns1.02
Hydrophobic ICL2 T 142 34x54 G.hns1 R 55 G.hns1.02
Van-der-waals ICL2 T 142 34x54 G.hns1 R 55 G.hns1.02
Hydrophobic TM6 K 245 6x32 G.H5 M 379 G.H5.24
Hydrophobic TM3 A 134 3x53 G.H5 I 378 G.H5.23
Van-der-waals TM3 A 134 3x53 G.H5 I 378 G.H5.23
Hydrophobic TM7 K 304 7x56 G.H5 L 380 G.H5.25
Van-der-waals TM7 K 304 7x56 G.H5 L 380 G.H5.25
Hydrophobic TM2 M 68 2x39 G.H5 L 380 G.H5.25
Van-der-waals TM2 M 68 2x39 G.H5 L 380 G.H5.25
Hydrophobic ICL2 L 139 34x51 G.S3 I 221 G.S3.01
Van-der-waals ICL2 L 139 34x51 G.S3 I 221 G.S3.01
Polar TM2 Y 70 2x41 G.HN R 52 G.HN.52
Van-der-waals TM2 Y 70 2x41 G.HN R 52 G.HN.52
Hydrophobic TM6 E 242 6x29 G.H5 L 371 G.H5.16
Hydrophobic TM2 Y 69 2x40 G.H5 L 380 G.H5.25
Van-der-waals TM2 Y 69 2x40 G.H5 L 380 G.H5.25
Hydrophobic TM2 M 68 2x39 G.H5 D 377 G.H5.22
Van-der-waals TM2 M 68 2x39 G.H5 D 377 G.H5.22