Go - IP receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 14.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM2 F 49 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 F 49 2x39 G.H5 C 351 G.H5.23
Polar ICL2 Y 125 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM5 M 213 5x66 G.H5 I 344 G.H5.16
Van-der-waals TM5 M 213 5x66 G.H5 I 344 G.H5.16
Hydrophobic TM3 L 121 3x54 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 210 5x63 G.H5 L 353 G.H5.25
Hydrophobic ICL2 Y 127 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM4 R 134 4x40 G.HN I 28 G.HN.52
Van-der-waals TM4 R 134 4x40 G.HN I 28 G.HN.52
Hydrophobic TM3 L 121 3x54 G.H5 N 347 G.H5.19
Hydrophobic ICL2 P 124 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 124 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM5 Q 216 5x69 G.H5 D 341 G.H5.13
Polar ICL3 R 227 - G.H4 E 309 G.H4.16
Polar TM2 S 47 2x37 G.H5 G 350 G.H5.22
Polar TM5 Q 217 5x70 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 Q 217 5x70 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 Q 217 5x70 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 L 121 3x54 G.H5 C 351 G.H5.23
Polar TM5 H 220 5x73 G.S6 H 322 G.S6.04
Aromatic TM5 H 220 5x73 G.S6 H 322 G.S6.04
Hydrophobic TM5 H 220 5x73 G.S6 H 322 G.S6.04
Van-der-waals TM5 H 220 5x73 G.S6 H 322 G.S6.04
Polar ICL3 R 227 - G.h4s6 N 312 G.h4s6.02
Hydrophobic TM3 A 120 3x53 G.H5 C 351 G.H5.23
Polar ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Polar TM5 H 220 5x73 G.H4 Q 305 G.H4.12
Polar ICL3 S 223 - G.H4 Q 305 G.H4.12
Hydrophobic ICL3 S 223 - G.H4 Q 305 G.H4.12
Van-der-waals ICL3 S 223 - G.H4 Q 305 G.H4.12
Polar ICL2 Q 129 34x55 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 Q 129 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic TM3 E 116 3x49 G.H5 C 351 G.H5.23
Hydrophobic ICL2 A 128 34x54 G.S3 L 195 G.S3.01
Hydrophobic TM5 L 210 5x63 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 210 5x63 G.H5 L 348 G.H5.20
Hydrophobic TM5 H 220 5x73 G.S6 Y 320 G.S6.02
Hydrophobic TM5 M 213 5x66 G.H5 A 345 G.H5.17
Hydrophobic TM2 F 49 2x39 G.H5 G 352 G.H5.24
Hydrophobic TM3 L 121 3x54 G.H5 I 344 G.H5.16
Van-der-waals TM3 L 121 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM3 R 117 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 117 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM5 V 206 5x59 G.H5 L 353 G.H5.25
Polar TM5 Q 217 5x70 G.S6 Y 320 G.S6.02
Hydrophobic TM5 Q 217 5x70 G.S6 Y 320 G.S6.02
Van-der-waals TM5 Q 217 5x70 G.S6 Y 320 G.S6.02
Hydrophobic C-term W 352 - G.H2 K 211 G.H2.06
Van-der-waals C-term W 352 - G.H2 K 211 G.H2.06
Hydrophobic ICL2 Q 129 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic TM6 H 237 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 H 237 6x33 G.H5 L 348 G.H5.20
Hydrophobic ICL2 D 131 34x57 G.HN I 28 G.HN.52
Hydrophobic ICL2 Y 125 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 Y 125 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM6 M 244 6x40 G.H5 L 353 G.H5.25
Hydrophobic ICL2 Y 125 34x51 G.H5 I 343 G.H5.15
Polar TM3 A 120 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 120 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 120 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM6 H 237 6x33 G.H5 Y 354 G.H5.26
Van-der-waals TM6 H 237 6x33 G.H5 Y 354 G.H5.26
Hydrophobic ICL3 L 224 - G.H4 Q 305 G.H4.12
Polar TM6 H 237 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 H 237 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 H 237 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 240 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL3 L 224 - G.H4 A 306 G.H4.13
Van-der-waals ICL3 L 224 - G.H4 A 306 G.H4.13
Hydrophobic TM2 F 49 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 F 49 2x39 G.H5 G 350 G.H5.22
Hydrophobic ICL2 P 124 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 L 241 6x37 G.H5 L 353 G.H5.25
Polar TM4 R 134 4x40 G.HN K 24 G.HN.48
Hydrophobic TM4 R 134 4x40 G.HN K 24 G.HN.48
Van-der-waals TM4 R 134 4x40 G.HN K 24 G.HN.48
Hydrophobic ICL2 Y 125 34x51 G.s2s3 K 193 G.s2s3.01
Van-der-waals ICL2 Y 125 34x51 G.s2s3 K 193 G.s2s3.01
Hydrophobic ICL2 P 124 34x50 G.H5 T 340 G.H5.12
Polar H8 R 296 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 R 296 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 R 296 8x47 G.H5 G 352 G.H5.24
Polar TM5 Q 221 5x74 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 Q 221 5x74 G.h4s6 E 318 G.h4s6.12
Polar TM3 R 117 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 117 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 213 5x66 G.H5 D 341 G.H5.13
Hydrophobic ICL3 L 224 - G.H4 E 309 G.H4.16
Van-der-waals ICL3 L 224 - G.H4 E 309 G.H4.16
Hydrophobic TM3 L 121 3x54 G.H5 L 348 G.H5.20