Gt1 - RXFP3 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 76.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 V 324 6x33 G.H5 L 344 G.H5.20
Van-der-waals TM6 V 324 6x33 G.H5 L 344 G.H5.20
Ionic TM6 R 320 6x29 G.H5 D 337 G.H5.13
Polar TM6 R 320 6x29 G.H5 D 337 G.H5.13
Hydrophobic TM6 R 320 6x29 G.H5 D 337 G.H5.13
Van-der-waals TM6 R 320 6x29 G.H5 D 337 G.H5.13
Polar ICL2 C 202 - G.HN K 20 G.HN.48
Hydrophobic ICL2 C 202 - G.HN K 20 G.HN.48
Van-der-waals ICL2 C 202 - G.HN K 20 G.HN.48
Hydrophobic TM3 R 180 3x50 G.H5 L 349 G.H5.25
Hydrophobic ICL2 L 188 - G.H5 I 340 G.H5.16
Van-der-waals ICL2 L 188 - G.H5 I 340 G.H5.16
Hydrophobic C-term P 450 - G.H3 H 252 G.H3.15
Van-der-waals C-term P 450 - G.H3 H 252 G.H3.15
Hydrophobic ICL2 L 188 - G.H5 T 336 G.H5.12
Van-der-waals ICL2 L 188 - G.H5 T 336 G.H5.12
Polar ICL2 R 204 - G.HN K 20 G.HN.48
Hydrophobic ICL2 R 204 - G.HN K 20 G.HN.48
Van-der-waals ICL2 R 204 - G.HN K 20 G.HN.48
Hydrophobic TM5 Y 287 5x58 G.H5 L 349 G.H5.25
Polar C-term Y 460 - G.s4h3 V 236 G.s4h3.14
Hydrophobic C-term Y 460 - G.s4h3 V 236 G.s4h3.14
Van-der-waals C-term Y 460 - G.s4h3 V 236 G.s4h3.14
Hydrophobic TM6 R 320 6x29 G.H5 K 341 G.H5.17
Van-der-waals TM6 R 320 6x29 G.H5 K 341 G.H5.17
Polar ICL2 R 204 - G.HN K 18 G.HN.46
Hydrophobic ICL2 R 204 - G.HN K 18 G.HN.46
Van-der-waals ICL2 R 204 - G.HN K 18 G.HN.46
Hydrophobic H8 R 393 8x47 G.H5 G 348 G.H5.24
Van-der-waals H8 R 393 8x47 G.H5 G 348 G.H5.24
Hydrophobic C-term V 453 - G.H3 E 241 G.H3.04
Hydrophobic C-term G 451 - G.H2 W 207 G.H2.07
Hydrophobic C-term L 463 - G.H3 L 243 G.H3.06
Hydrophobic TM6 V 324 6x33 G.H5 L 349 G.H5.25
Hydrophobic TM2 I 117 2x39 G.H5 C 347 G.H5.23
Van-der-waals TM2 I 117 2x39 G.H5 C 347 G.H5.23
Hydrophobic TM5 F 293 5x64 G.H5 I 340 G.H5.16
Polar C-term Y 460 - G.s4h3 E 235 G.s4h3.13
Van-der-waals C-term Y 460 - G.s4h3 E 235 G.s4h3.13
Polar C-term Y 447 - G.H3 R 253 G.H3.16
Aromatic C-term Y 447 - G.H3 R 253 G.H3.16
Hydrophobic C-term Y 447 - G.H3 R 253 G.H3.16
Van-der-waals C-term Y 447 - G.H3 R 253 G.H3.16
Van-der-waals ICL2 G 207 - G.HN K 20 G.HN.48
Hydrophobic C-term Y 455 - G.s4h3 V 236 G.s4h3.14
Van-der-waals C-term Y 455 - G.s4h3 V 236 G.s4h3.14
Hydrophobic ICL2 S 205 - G.HN K 20 G.HN.48
Van-der-waals ICL2 S 205 - G.HN K 20 G.HN.48
Ionic TM6 R 320 6x29 G.h4s6 E 314 G.h4s6.12
Polar TM6 R 320 6x29 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 R 320 6x29 G.h4s6 E 314 G.h4s6.12
Hydrophobic ICL2 R 204 - G.HN E 16 G.HN.44
Van-der-waals ICL2 R 204 - G.HN E 16 G.HN.44
Hydrophobic ICL2 S 205 - G.HN K 17 G.HN.45
Hydrophobic TM6 A 316 6x25 G.h4s6 E 314 G.h4s6.12
Aromatic TM6 R 320 6x29 G.H5 F 350 G.H5.26
Hydrophobic TM6 R 320 6x29 G.H5 F 350 G.H5.26
Van-der-waals TM6 R 320 6x29 G.H5 F 350 G.H5.26
Hydrophobic ICL2 L 188 - G.S3 L 190 G.S3.01
Polar H8 R 393 8x47 G.H5 C 347 G.H5.23
Hydrophobic H8 R 393 8x47 G.H5 C 347 G.H5.23
Van-der-waals H8 R 393 8x47 G.H5 C 347 G.H5.23
Hydrophobic C-term G 451 - G.H3 L 245 G.H3.08
Van-der-waals C-term G 451 - G.H3 L 245 G.H3.08
Ionic H8 R 394 8x48 G.h4s6 D 311 G.h4s6.09
Polar H8 R 394 8x48 G.h4s6 D 311 G.h4s6.09
Hydrophobic ICL2 L 206 - G.HN E 24 G.HN.52
Van-der-waals ICL2 L 206 - G.HN E 24 G.HN.52
Polar C-term Y 455 - G.H2 R 201 G.H2.01
Hydrophobic C-term Y 455 - G.H2 R 201 G.H2.01
Van-der-waals C-term Y 455 - G.H2 R 201 G.H2.01
Hydrophobic C-term V 453 - G.H3 H 244 G.H3.07
Van-der-waals C-term V 453 - G.H3 H 244 G.H3.07
Polar ICL2 S 190 - G.s2s3 D 189 G.s2s3.02
Hydrophobic ICL2 S 190 - G.s2s3 D 189 G.s2s3.02
Van-der-waals ICL2 S 190 - G.s2s3 D 189 G.s2s3.02
Hydrophobic ICL2 H 191 - G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 H 191 - G.hns1 R 28 G.hns1.03
Polar TM6 R 320 6x29 G.S6 Y 316 G.S6.02
Hydrophobic TM5 L 290 5x61 G.H5 L 349 G.H5.25
Van-der-waals TM5 L 290 5x61 G.H5 L 349 G.H5.25
Polar TM3 S 183 3x53 G.H5 C 347 G.H5.23
Hydrophobic TM3 S 183 3x53 G.H5 C 347 G.H5.23
Van-der-waals TM3 S 183 3x53 G.H5 C 347 G.H5.23
Polar ICL2 G 203 - G.HN E 21 G.HN.49
Hydrophobic ICL2 G 203 - G.HN E 21 G.HN.49
Van-der-waals ICL2 G 203 - G.HN E 21 G.HN.49
Polar TM5 R 297 5x68 G.H5 T 336 G.H5.12
Hydrophobic TM5 R 297 5x68 G.H5 T 336 G.H5.12
Van-der-waals TM5 R 297 5x68 G.H5 T 336 G.H5.12
Hydrophobic ICL2 C 202 - G.HN K 17 G.HN.45
Van-der-waals ICL2 C 202 - G.HN K 17 G.HN.45
Hydrophobic ICL2 A 187 - G.H5 N 343 G.H5.19
Van-der-waals ICL2 A 187 - G.H5 N 343 G.H5.19
Polar TM5 G 304 5x75 G.H5 K 329 G.H5.05
Hydrophobic TM5 G 304 5x75 G.H5 K 329 G.H5.05
Van-der-waals TM5 G 304 5x75 G.H5 K 329 G.H5.05
Polar C-term G 451 - G.H2 R 204 G.H2.04
Hydrophobic C-term G 451 - G.H2 R 204 G.H2.04
Van-der-waals C-term G 451 - G.H2 R 204 G.H2.04
Hydrophobic C-term L 445 - G.h4s6 M 308 G.h4s6.03
Polar C-term Y 447 - G.H3 N 251 G.H3.14
Van-der-waals C-term Y 447 - G.H3 N 251 G.H3.14
Hydrophobic ICL3 G 311 - G.H4 K 300 G.H4.12
Polar ICL2 C 202 - G.HN E 21 G.HN.49
Hydrophobic ICL2 C 201 - G.HN E 21 G.HN.49
Van-der-waals ICL2 C 201 - G.HN E 21 G.HN.49
Polar TM3 R 180 3x50 G.H5 C 347 G.H5.23
Hydrophobic TM3 R 180 3x50 G.H5 C 347 G.H5.23
Van-der-waals TM3 R 180 3x50 G.H5 C 347 G.H5.23
Hydrophobic ICL2 G 203 - G.HN K 20 G.HN.48
Van-der-waals ICL2 G 203 - G.HN K 20 G.HN.48
Ionic ICL2 R 204 - G.HN D 22 G.HN.50
Polar ICL2 R 204 - G.HN D 22 G.HN.50
Hydrophobic ICL2 R 204 - G.HN D 22 G.HN.50
Van-der-waals ICL2 R 204 - G.HN D 22 G.HN.50
Hydrophobic ICL2 A 187 - G.H5 I 339 G.H5.15
Van-der-waals ICL2 A 187 - G.H5 I 339 G.H5.15
Hydrophobic ICL2 S 190 - G.hns1 R 28 G.hns1.03
Hydrophobic TM6 R 320 6x29 G.H5 L 344 G.H5.20
Polar ICL2 K 189 - G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 K 189 - G.hns1 R 28 G.hns1.03
Hydrophobic TM3 V 184 3x54 G.H5 L 344 G.H5.20
Hydrophobic C-term L 463 - G.h4s6 L 306 G.h4s6.01
Polar C-term Y 455 - G.H3 E 241 G.H3.04
Van-der-waals C-term Y 455 - G.H3 E 241 G.H3.04
Hydrophobic TM6 V 324 6x33 G.H5 F 350 G.H5.26
Aromatic TM6 K 323 6x32 G.H5 F 350 G.H5.26
Hydrophobic TM6 K 323 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 323 6x32 G.H5 F 350 G.H5.26
Hydrophobic ICL2 L 188 - G.H5 I 339 G.H5.15
Ionic ICL2 D 200 - G.HN K 17 G.HN.45
Polar ICL2 D 200 - G.HN K 17 G.HN.45
Hydrophobic ICL2 D 200 - G.HN K 17 G.HN.45
Van-der-waals ICL2 D 200 - G.HN K 17 G.HN.45
Hydrophobic C-term P 450 - G.h2s4 F 211 G.h2s4.01
Van-der-waals C-term P 450 - G.h2s4 F 211 G.h2s4.01
Hydrophobic ICL2 R 204 - G.HN K 17 G.HN.45
Van-der-waals ICL2 R 204 - G.HN K 17 G.HN.45
Hydrophobic TM5 I 294 5x65 G.H5 L 344 G.H5.20
Hydrophobic C-term V 453 - G.H3 L 245 G.H3.08
Hydrophobic TM6 V 328 6x37 G.H5 L 349 G.H5.25
Polar C-term G 451 - G.H3 S 248 G.H3.11
Van-der-waals C-term G 451 - G.H3 S 248 G.H3.11
Polar ICL2 S 205 - G.HN E 16 G.HN.44
Hydrophobic ICL2 S 205 - G.HN E 16 G.HN.44
Hydrophobic TM5 R 297 5x68 G.H5 I 340 G.H5.16
Polar TM3 R 180 3x50 G.H5 G 348 G.H5.24
Polar H8 R 393 8x47 G.H5 D 346 G.H5.22
Van-der-waals H8 R 393 8x47 G.H5 D 346 G.H5.22
Hydrophobic ICL2 L 206 - G.HN K 20 G.HN.48
Van-der-waals ICL2 L 206 - G.HN K 20 G.HN.48
Polar C-term Y 448 - G.H3 S 248 G.H3.11
Aromatic C-term Y 447 - G.H3 H 252 G.H3.15
Hydrophobic C-term Y 447 - G.H3 H 252 G.H3.15
Van-der-waals C-term Y 447 - G.H3 H 252 G.H3.15
Hydrophobic TM3 V 184 3x54 G.H5 I 340 G.H5.16
Hydrophobic ICL2 K 189 - G.s2s3 D 189 G.s2s3.02
Polar ICL2 R 204 - G.HN E 21 G.HN.49
Hydrophobic ICL2 R 204 - G.HN E 21 G.HN.49
Van-der-waals ICL2 R 204 - G.HN E 21 G.HN.49
Polar ICL2 S 209 - G.HN K 20 G.HN.48
Polar ICL2 C 201 - G.HN K 17 G.HN.45
Hydrophobic ICL2 C 201 - G.HN K 17 G.HN.45
Van-der-waals ICL2 C 201 - G.HN K 17 G.HN.45
Polar TM6 S 327 6x36 G.H5 L 349 G.H5.25
Hydrophobic TM6 S 327 6x36 G.H5 L 349 G.H5.25
Hydrophobic TM3 V 184 3x54 G.H5 N 343 G.H5.19
Polar ICL2 R 204 - G.HN L 19 G.HN.47
Hydrophobic ICL2 R 204 - G.HN L 19 G.HN.47
Van-der-waals ICL2 R 204 - G.HN L 19 G.HN.47
Hydrophobic H8 R 394 8x48 G.h4s6 V 312 G.h4s6.10
Hydrophobic C-term P 450 - G.H2 W 207 G.H2.07