G13 - UT receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 74.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 19.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 A 151 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 151 3x53 G.H5 L 374 G.H5.23
Hydrophobic ICL2 L 156 34x51 G.H5 V 362 G.H5.11
Hydrophobic TM2 A 84 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM2 Y 87 2x40 G.H5 L 376 G.H5.25
Polar H8 T 319 8x47 G.H5 M 375 G.H5.24
Hydrophobic H8 T 319 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 T 319 8x47 G.H5 M 375 G.H5.24
Hydrophobic H8 T 319 8x47 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 P 155 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 155 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL2 L 156 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 156 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 V 152 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 152 3x54 G.H5 L 367 G.H5.16
Polar ICL2 P 155 34x50 G.H5 N 370 G.H5.19
Hydrophobic TM7 L 318 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 L 318 7x56 G.H5 M 375 G.H5.24
Hydrophobic C-term S 369 - H.HA K 105 H.HA.28
Van-der-waals C-term S 369 - H.HA K 105 H.HA.28
Hydrophobic C-term L 370 - H.hdhe F 168 H.hdhe.01
Hydrophobic H8 T 319 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 T 319 8x47 G.H5 L 376 G.H5.25
Hydrophobic ICL2 P 155 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 155 34x50 G.H5 I 366 G.H5.15
Hydrophobic C-term L 370 - H.HA K 105 H.HA.28
Van-der-waals C-term L 370 - H.HA K 105 H.HA.28
Hydrophobic TM6 G 253 6x30 G.H5 L 371 G.H5.20
Van-der-waals TM6 G 253 6x30 G.H5 L 371 G.H5.20
Hydrophobic ICL2 V 159 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 V 159 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 A 256 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 A 256 6x33 G.H5 M 375 G.H5.24
Polar TM3 L 153 3x55 G.H5 K 363 G.H5.12
Hydrophobic TM3 L 153 3x55 G.H5 K 363 G.H5.12
Van-der-waals TM3 L 153 3x55 G.H5 K 363 G.H5.12
Polar TM3 A 151 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 151 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 151 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 V 152 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 V 152 3x54 G.H5 L 371 G.H5.20
Hydrophobic ICL2 L 156 34x51 G.H5 F 359 G.H5.08
Van-der-waals ICL2 L 156 34x51 G.H5 F 359 G.H5.08
Hydrophobic C-term L 372 - H.HA L 106 H.HA.29
Van-der-waals C-term L 372 - H.HA L 106 H.HA.29
Polar TM3 R 148 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 148 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 148 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL2 P 155 34x50 G.H5 L 367 G.H5.16
Hydrophobic TM6 P 252 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 P 252 6x29 G.H5 H 368 G.H5.17
Hydrophobic C-term L 370 - G.s4h3 R 260 G.s4h3.12
Van-der-waals C-term L 370 - G.s4h3 R 260 G.s4h3.12
Polar C-term V 371 - G.s4h3 R 260 G.s4h3.12
Van-der-waals C-term V 371 - G.s4h3 R 260 G.s4h3.12
Hydrophobic TM2 M 86 2x39 G.H5 Q 373 G.H5.22
Hydrophobic TM6 P 252 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 P 252 6x29 G.H5 M 375 G.H5.24
Hydrophobic C-term L 370 - H.HA A 102 H.HA.25
Hydrophobic TM3 E 147 3x49 G.H5 L 374 G.H5.23
Hydrophobic C-term L 372 - H.HA K 105 H.HA.28
Van-der-waals C-term L 372 - H.HA K 105 H.HA.28
Hydrophobic ICL2 L 156 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM3 A 151 3x53 G.H5 L 367 G.H5.16
Hydrophobic TM6 R 255 6x32 G.H5 M 375 G.H5.24
Polar C-term S 369 - G.s4h3 R 260 G.s4h3.12
Van-der-waals C-term S 369 - G.s4h3 R 260 G.s4h3.12
Hydrophobic ICL2 V 159 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic TM2 A 84 2x37 G.H5 L 376 G.H5.25
Van-der-waals TM2 A 84 2x37 G.H5 L 376 G.H5.25
Hydrophobic C-term L 370 - H.HA V 98 H.HA.21
Van-der-waals C-term L 370 - H.HA V 98 H.HA.21
Polar H8 N 321 8x49 G.H5 Q 377 G.H5.26
Hydrophobic H8 N 321 8x49 G.H5 Q 377 G.H5.26
Van-der-waals H8 N 321 8x49 G.H5 Q 377 G.H5.26
Polar ICL2 Q 160 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 Q 160 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 Q 160 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic TM7 L 318 7x56 G.H5 L 376 G.H5.25
Hydrophobic TM2 V 90 2x43 G.H5 L 376 G.H5.25
Van-der-waals TM2 V 90 2x43 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 156 34x51 G.S1 V 49 G.S1.02
Hydrophobic ICL2 V 159 34x54 G.H5 I 366 G.H5.15
Van-der-waals ICL2 V 159 34x54 G.H5 I 366 G.H5.15
Polar ICL2 Q 160 34x55 G.s2s3 N 215 G.s2s3.02
Ionic TM6 R 251 6x28 G.H5 D 364 G.H5.13
Polar TM6 R 251 6x28 G.H5 D 364 G.H5.13
Hydrophobic TM6 R 251 6x28 G.H5 D 364 G.H5.13
Van-der-waals TM6 R 251 6x28 G.H5 D 364 G.H5.13
Hydrophobic ICL1 L 80 12x48 G.H5 L 376 G.H5.25
Van-der-waals ICL1 L 80 12x48 G.H5 L 376 G.H5.25
Polar TM2 S 85 2x38 G.H5 Q 373 G.H5.22
Hydrophobic TM2 S 85 2x38 G.H5 Q 373 G.H5.22
Van-der-waals TM2 S 85 2x38 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 L 156 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 L 156 34x51 G.S3 V 216 G.S3.01
Polar ICL2 T 158 34x53 G.H5 N 370 G.H5.19
Van-der-waals ICL2 T 158 34x53 G.H5 N 370 G.H5.19
Polar C-term L 370 - H.HA D 101 H.HA.24
Hydrophobic C-term L 370 - H.HA D 101 H.HA.24
Van-der-waals C-term L 370 - H.HA D 101 H.HA.24
Hydrophobic TM2 M 86 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 M 86 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM6 R 248 6x25 G.H4 R 331 G.H4.16
Polar C-term A 373 - H.HD E 167 H.HD.12
Hydrophobic C-term A 373 - H.HD E 167 H.HD.12
Van-der-waals C-term A 373 - H.HD E 167 H.HD.12
Hydrophobic TM6 A 256 6x33 G.H5 L 371 G.H5.20