Structure information

Rhodopsin

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6I9K

SPECIES

Hasarius adansoni

RESOLUTION

2.150

PREFERRED CHAIN

A

REFERENCE

10.1073/PNAS.1902192116

PUBLICATION DATE

July 3, 2019

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Retinal (11-cis) Y126 3.28x28 TM3 hydrophobic
Retinal (11-cis) I202 45.52x52 ECL2 hydrophobic
Retinal (11-cis) Y218 5.42x43 TM5 hydrophobic
Retinal (11-cis) V222 5.46x461 TM5 hydrophobic
Retinal (11-cis) Y223 5.47x47 TM5 hydrophobic
Retinal (11-cis) W286 6.44x44 TM6 hydrophobic
Retinal (11-cis) W290 6.48x48 TM6 hydrophobic
Retinal (11-cis) Y293 6.51x51 TM6 hydrophobic
Retinal (11-cis) L294 6.52x52 TM6 hydrophobic
Retinal (11-cis) A317 7.39x38 TM7 hydrophobic

Ligands

Retinal (11-cis)

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Residue Diagrams

G N G S V S I I G I V I I L M G L I Y H 1 L N L A L S D F G M L F F M M P T M S I 2 M V L S W I S A S G F L S G I M G Y L E 3 A L L R M L F V W I W S L G W T I A P M 4 Y C Y I I I F L P V F Y V F I A Y A I L Y 5 F M T I C C W F M A W T P Y L T L S F L 6 I P N Y C A S A K A F I A G W V S T M 7
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ICL1 K N L R ICL1ECL1 T W V I ECL1ICL2 G M A G K P L ICL2ECL2 G W S R Y V P E G S M T S C T I D Y I D T ECL2ICL3 I K S L R S ICL3ECL3 D R T W L ECL3N-term M L P H A A K M A A R V A G D H D G R N I S I V D L L P E D M L P M I H E H W Y K F P P M N-termC-term P C L K C G S D S P K G D S A S T V A E S E K A G E C-term E T S M H Y I L G M L I I V I G I I S V S G N G V V M Y L M M T V T P G N F L V L N L A L S D F G M L F F M M P T M S I N C F A E G P F M C E L Y G M I G S L F G S A S I W S L V M I T L D R Y N V I V K T K V G A L L R M L F V W I W S L G W T I A P M Y A I N P M S Y L I A Y A I F V Y F V P L F I I I Y C Y A F I V M Q V A A H E K S L R E Q A K K M N N E D N K K A S A E F R L A K V A F M T I C C W F M A W T P Y L T L S F L G I F S T P M T S V W G A I F A K A S A C Y N P I V Y G I S H P K L H D Y R A A K F
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Residue Table


GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM3
3x28 3.28x28 Y126
ECL2
45x52 45.52x52 I202
TM5
5x43 5.42x43 Y218
5x461 5.46x461 V222
5x47 5.47x47 Y223
TM6
6x44 6.44x44 W286
6x48 6.48x48 W290
6x51 6.51x51 Y293
6x52 6.52x52 L294
TM7
7x38 7.39x38 A317