CCR5 - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

C

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

3.2 Å

REFERENCE

PUBLICATION DATE

June 30, 2021

3D VIEW

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LIGAND INTERACTIONS

LIGANDS

CCL5 - Agonist gtoplig

ENDOGENOUS LIGANDS

CCL5, CCL13, CCL3, CCL14, CCL8, CCL2, CCL16, CCL7, CCL11, CCL4



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic ICL2 K 138 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 L 137 34x54 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 137 34x54 G.S3 L 194 G.S3.01
Hydrophobic TM5 R 223 5x67 G.H5 I 344 G.H5.16
Van-der-waals TM5 R 223 5x67 G.H5 I 344 G.H5.16
Hydrophobic TM5 I 217 5x61 G.H5 L 353 G.H5.25
Hydrophobic TM3 V 130 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 130 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM5 L 221 5x65 G.H5 F 354 G.H5.26
Hydrophobic ICL3 R 225 - G.S6 Y 320 G.S6.02
Ionic ICL2 R 140 34x57 G.H5 D 350 G.H5.22
Polar ICL2 R 140 34x57 G.H5 D 350 G.H5.22
Ionic ICL3 R 225 - G.h4s6 E 318 G.h4s6.12
Polar ICL3 R 225 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 R 225 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 R 225 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 I 237 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 K 229 6x29 G.H5 K 349 G.H5.21
Hydrophobic H8 E 302 8x48 G.H5 G 352 G.H5.24
Van-der-waals H8 E 302 8x48 G.H5 G 352 G.H5.24
Polar TM3 R 126 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 126 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 137 34x54 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 L 137 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic TM5 C 224 5x68 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 229 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM6 A 233 6x33 G.H5 F 354 G.H5.26
Hydrophobic ICL2 A 133 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 A 133 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL2 A 133 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 V 134 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM7 V 300 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 V 300 7x56 G.H5 G 352 G.H5.24
Hydrophobic H8 K 303 8x49 G.H5 K 349 G.H5.21
Hydrophobic TM6 A 233 6x33 G.H5 L 353 G.H5.25
Polar TM3 A 129 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 129 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 129 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM5 T 220 5x64 G.H5 I 344 G.H5.16
Hydrophobic ICL2 V 134 34x51 G.S3 L 194 G.S3.01
Van-der-waals H8 E 302 8x48 G.H5 D 350 G.H5.22
Ionic TM5 R 223 5x67 G.H5 D 341 G.H5.13
Polar TM5 R 223 5x67 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 223 5x67 G.H5 D 341 G.H5.13
Hydrophobic TM3 V 130 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM5 L 221 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 221 5x65 G.H5 L 348 G.H5.20
Hydrophobic ICL2 V 134 34x51 G.s2s3 D 193 G.s2s3.02
Hydrophobic H8 E 302 8x48 G.H5 C 351 G.H5.23
Polar TM6 K 229 6x29 G.h4s6 D 315 G.h4s6.09
Hydrophobic TM3 R 126 3x50 G.H5 L 353 G.H5.25