Gz - ADGRL4 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 21.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 I 518 3x57 G.H5 I 352 G.H5.23
Van-der-waals TM3 I 518 3x57 G.H5 I 352 G.H5.23
Ionic TM5 H 599 5x64 G.H5 D 342 G.H5.13
Polar TM5 H 599 5x64 G.H5 D 342 G.H5.13
Hydrophobic TM5 H 599 5x64 G.H5 D 342 G.H5.13
Van-der-waals TM5 H 599 5x64 G.H5 D 342 G.H5.13
Hydrophobic ICL2 F 528 - G.HN Q 28 G.HN.52
Van-der-waals ICL2 F 528 - G.HN Q 28 G.HN.52
Hydrophobic TM3 V 520 3x59 G.H5 I 345 G.H5.16
Hydrophobic TM6 G 619 6x41 G.H5 L 354 G.H5.25
Hydrophobic TM3 G 521 3x60 G.H5 I 345 G.H5.16
Van-der-waals TM3 G 521 3x60 G.H5 I 345 G.H5.16
Hydrophobic TM6 L 623 6x45 G.H5 L 354 G.H5.25
Van-der-waals TM6 L 623 6x45 G.H5 L 354 G.H5.25
Hydrophobic TM3 G 521 3x60 G.s2s3 E 194 G.s2s3.02
Van-der-waals TM3 G 521 3x60 G.s2s3 E 194 G.s2s3.02
Van-der-waals TM3 G 521 3x60 G.s2s3 K 193 G.s2s3.01
Hydrophobic TM3 V 519 3x58 G.H5 I 345 G.H5.16
Van-der-waals TM3 V 519 3x58 G.H5 I 345 G.H5.16
Polar ICL2 G 527 - G.HN Q 28 G.HN.52
Hydrophobic ICL2 G 527 - G.HN Q 28 G.HN.52
Hydrophobic ICL2 N 525 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 N 525 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 N 525 - G.hns1 Q 30 G.hns1.01
Polar TM3 G 521 3x60 G.S3 L 195 G.S3.01
Hydrophobic TM3 G 521 3x60 G.S3 L 195 G.S3.01
Van-der-waals TM3 G 521 3x60 G.S3 L 195 G.S3.01
Polar ICL2 N 525 - G.HN R 29 G.HN.53
Hydrophobic ICL2 N 525 - G.HN R 29 G.HN.53
Van-der-waals ICL2 N 525 - G.HN R 29 G.HN.53
Hydrophobic TM5 V 596 5x61 G.H5 C 355 G.H5.26
Hydrophobic ICL2 I 523 - G.S3 L 195 G.S3.01
Van-der-waals ICL2 I 523 - G.S3 L 195 G.S3.01
Polar ICL2 K 526 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 K 526 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 K 526 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 V 522 - G.s2s3 E 194 G.s2s3.02
Polar ICL2 N 525 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 N 525 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 N 525 - G.hns1 R 31 G.hns1.02
Hydrophobic TM5 I 592 5x57 G.H5 L 354 G.H5.25
Van-der-waals TM5 I 592 5x57 G.H5 L 354 G.H5.25
Hydrophobic ICL2 V 522 - G.S3 L 195 G.S3.01
Van-der-waals ICL2 V 522 - G.S3 L 195 G.S3.01
Hydrophobic TM3 L 515 3x54 G.H5 I 352 G.H5.23
Van-der-waals TM3 L 515 3x54 G.H5 I 352 G.H5.23
Hydrophobic TM3 L 515 3x54 G.H5 L 354 G.H5.25
Van-der-waals TM3 L 515 3x54 G.H5 L 354 G.H5.25
Hydrophobic TM3 I 518 3x57 G.H5 I 345 G.H5.16
Van-der-waals TM3 I 518 3x57 G.H5 I 345 G.H5.16
Hydrophobic ICL2 Y 524 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 Y 524 - G.hns1 R 32 G.hns1.03
Hydrophobic TM3 I 518 3x57 G.H5 L 349 G.H5.20
Van-der-waals TM3 I 518 3x57 G.H5 L 349 G.H5.20
Hydrophobic TM3 I 518 3x57 G.H5 N 348 G.H5.19
Van-der-waals TM3 I 518 3x57 G.H5 N 348 G.H5.19
Polar H8 K 670 8x49 G.H5 Y 351 G.H5.22
Hydrophobic H8 K 670 8x49 G.H5 Y 351 G.H5.22
Van-der-waals H8 K 670 8x49 G.H5 Y 351 G.H5.22
Polar TM2 R 459 2x46 G.H5 Y 351 G.H5.22
Hydrophobic TM2 R 459 2x46 G.H5 Y 351 G.H5.22
Van-der-waals TM3 V 520 3x59 G.s2s3 K 193 G.s2s3.01
Hydrophobic ICL2 I 523 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 I 523 - G.hns1 R 31 G.hns1.02
Hydrophobic TM3 V 520 3x59 G.s2s3 E 194 G.s2s3.02
Van-der-waals TM3 V 520 3x59 G.s2s3 E 194 G.s2s3.02
Aromatic TM4 H 530 4x43 G.hns1 R 31 G.hns1.02
Hydrophobic TM2 R 459 2x46 G.H5 G 353 G.H5.24
Van-der-waals TM2 R 459 2x46 G.H5 G 353 G.H5.24
Hydrophobic ICL2 I 523 - G.S1 E 33 G.S1.01
Van-der-waals ICL2 I 523 - G.S1 E 33 G.S1.01
Ionic ICL3 K 604 - G.h4s6 E 319 G.h4s6.12
Polar ICL3 K 604 - G.h4s6 E 319 G.h4s6.12
Polar ICL2 N 525 - G.HN S 27 G.HN.51
Hydrophobic ICL2 N 525 - G.HN S 27 G.HN.51
Van-der-waals ICL2 N 525 - G.HN S 27 G.HN.51
Polar TM2 R 459 2x46 G.H5 I 352 G.H5.23
Hydrophobic TM2 R 459 2x46 G.H5 I 352 G.H5.23
Van-der-waals TM2 R 459 2x46 G.H5 I 352 G.H5.23
Hydrophobic ICL2 I 523 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 I 523 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 I 523 - G.S1 I 34 G.S1.02
Van-der-waals ICL2 I 523 - G.S1 I 34 G.S1.02
Polar ICL2 N 525 - G.HN Q 28 G.HN.52
Hydrophobic ICL2 N 525 - G.HN Q 28 G.HN.52
Van-der-waals ICL2 N 525 - G.HN Q 28 G.HN.52
Hydrophobic TM5 V 596 5x61 G.H5 L 349 G.H5.20
Hydrophobic TM3 V 519 3x58 G.H5 L 349 G.H5.20
Van-der-waals TM3 V 519 3x58 G.H5 L 349 G.H5.20
Polar ICL2 Y 524 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 Y 524 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 Y 524 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 G 527 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 G 527 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 I 523 - G.h2s4 T 220 G.h2s4.05
Hydrophobic TM3 L 515 3x54 G.H5 L 349 G.H5.20