Go - A1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 89.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 P 112 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 112 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 L 113 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 113 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM6 I 239 6x40 G.H5 L 353 G.H5.25
Hydrophobic ICL2 M 117 34x55 G.hns1 K 32 G.hns1.03
Polar TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Polar TM6 K 224 6x25 G.h4s6 K 317 G.h4s6.11
Ionic TM5 K 214 5x72 G.h4s6 E 318 G.h4s6.12
Polar TM5 K 214 5x72 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 K 214 5x72 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 K 214 5x72 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 R 108 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 108 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM6 I 232 6x33 G.H5 Y 354 G.H5.26
Hydrophobic TM5 I 207 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 I 207 5x65 G.H5 L 348 G.H5.20
Hydrophobic H8 I 292 8x47 G.H5 C 351 G.H5.23
Hydrophobic H8 I 292 8x47 G.H5 G 352 G.H5.24
Ionic TM5 K 214 5x72 G.H5 D 341 G.H5.13
Polar TM5 K 214 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM5 K 214 5x72 G.H5 D 341 G.H5.13
Van-der-waals TM5 K 214 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM7 R 291 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 R 291 7x56 G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 113 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM5 Q 210 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 Q 210 5x68 G.H5 I 344 G.H5.16
Ionic TM6 K 228 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 228 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 228 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 S 235 6x36 G.H5 L 353 G.H5.25
Polar TM3 R 105 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 105 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 105 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 V 109 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 109 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 Y 225 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 I 232 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 232 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM3 R 105 3x50 G.H5 L 353 G.H5.25
Polar TM3 R 108 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 108 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 R 108 3x53 G.H5 N 347 G.H5.19
Polar TM6 K 228 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 228 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 228 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM5 V 203 5x61 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 236 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 236 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM3 V 109 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 L 113 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 113 34x51 G.H5 F 336 G.H5.08
Polar ICL2 K 116 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 K 116 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 K 116 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 P 112 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL2 P 112 34x50 G.H5 I 343 G.H5.15
Polar TM5 K 214 5x72 G.S6 Y 320 G.S6.02
Hydrophobic TM5 K 214 5x72 G.S6 Y 320 G.S6.02
Van-der-waals TM5 K 214 5x72 G.S6 Y 320 G.S6.02
Polar TM5 Q 210 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 Q 210 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 Q 210 5x68 G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 113 34x51 G.H5 T 340 G.H5.12