G13 - α2C-adrenoceptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 R 379 6x32 G.H5 Q 377 G.H5.26
Polar TM5 R 240 5x68 G.S6 Y 343 G.S6.02
Hydrophobic C-term Q 462 - G.H3 R 279 G.H3.16
Van-der-waals C-term Q 462 - G.H3 R 279 G.H3.16
Polar ICL2 R 163 34x57 G.H5 Q 373 G.H5.22
Ionic ICL2 E 158 34x52 G.H5 K 363 G.H5.12
Polar ICL2 E 158 34x52 G.H5 K 363 G.H5.12
Van-der-waals ICL2 E 158 34x52 G.H5 K 363 G.H5.12
Polar ICL3 R 248 - G.h4s6 Q 337 G.h4s6.11
Van-der-waals ICL3 R 248 - G.h4s6 Q 337 G.h4s6.11
Hydrophobic ICL2 L 161 34x55 G.S3 V 216 G.S3.01
Polar TM3 S 152 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 S 152 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 S 152 3x53 G.H5 N 370 G.H5.19
Hydrophobic ICL3 V 251 - G.H4 E 328 G.H4.13
Van-der-waals ICL3 V 251 - G.H4 E 328 G.H4.13
Hydrophobic TM5 I 233 5x61 G.H5 L 374 G.H5.23
Hydrophobic ICL2 N 160 34x54 G.H5 I 366 G.H5.15
Van-der-waals ICL2 N 160 34x54 G.H5 I 366 G.H5.15
Hydrophobic TM5 L 244 5x72 G.h4s6 P 341 G.h4s6.20
Hydrophobic TM1 L 77 1x58 G.HN F 4 G.HN.04
Hydrophobic ICL1 R 83 12x51 G.HN F 4 G.HN.04
Van-der-waals ICL1 R 83 12x51 G.HN F 4 G.HN.04
Hydrophobic ICL2 V 157 34x51 G.H5 K 363 G.H5.12
Polar ICL2 A 156 34x50 G.H5 N 370 G.H5.19
Polar H8 Q 442 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM5 R 240 5x68 G.H5 L 371 G.H5.20
Van-der-waals TM5 R 240 5x68 G.H5 L 371 G.H5.20
Ionic TM5 R 240 5x68 G.H5 D 364 G.H5.13
Polar TM5 R 240 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM5 R 240 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 R 240 5x68 G.H5 D 364 G.H5.13
Hydrophobic ICL2 V 157 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 V 157 34x51 G.S3 V 216 G.S3.01
Polar TM2 Q 86 2x39 G.H5 Q 373 G.H5.22
Van-der-waals TM2 Q 86 2x39 G.H5 Q 373 G.H5.22
Polar TM5 R 240 5x68 G.H5 H 368 G.H5.17
Hydrophobic TM5 R 240 5x68 G.H5 H 368 G.H5.17
Van-der-waals TM5 R 240 5x68 G.H5 H 368 G.H5.17
Hydrophobic TM6 F 380 6x33 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 149 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 149 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM7 F 440 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 F 440 7x56 G.H5 L 376 G.H5.25
Hydrophobic ICL2 A 156 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 A 156 34x50 G.H5 I 366 G.H5.15
Hydrophobic ICL2 L 161 34x55 G.S3 P 217 G.S3.02
Polar TM5 R 240 5x68 G.H5 L 367 G.H5.16
Hydrophobic TM5 R 240 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 R 240 5x68 G.H5 L 367 G.H5.16
Hydrophobic TM1 T 78 1x59 G.HN F 4 G.HN.04
Van-der-waals TM1 T 78 1x59 G.HN F 4 G.HN.04
Polar ICL3 P 250 - G.H4 K 324 G.H4.09
Hydrophobic ICL3 P 250 - G.H4 K 324 G.H4.09
Van-der-waals ICL3 P 250 - G.H4 K 324 G.H4.09
Polar H8 N 441 8x47 G.H5 L 376 G.H5.25
Hydrophobic H8 N 441 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 N 441 8x47 G.H5 L 376 G.H5.25
Polar ICL2 N 160 34x54 G.H5 N 370 G.H5.19
Hydrophobic ICL2 N 160 34x54 G.H5 N 370 G.H5.19
Van-der-waals ICL2 N 160 34x54 G.H5 N 370 G.H5.19
Polar ICL3 V 251 - G.H4 K 324 G.H4.09
Hydrophobic ICL3 V 251 - G.H4 K 324 G.H4.09
Van-der-waals ICL3 V 251 - G.H4 K 324 G.H4.09
Polar ICL2 L 161 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 L 161 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 L 161 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 V 157 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 V 153 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 V 153 3x54 G.H5 L 371 G.H5.20
Hydrophobic TM3 V 153 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 153 3x54 G.H5 L 367 G.H5.16
Hydrophobic TM6 F 380 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 F 380 6x33 G.H5 M 375 G.H5.24
Hydrophobic TM3 V 153 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 V 153 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM5 A 237 5x65 G.H5 L 371 G.H5.20
Hydrophobic ICL2 A 156 34x50 G.H5 L 367 G.H5.16
Hydrophobic H8 Q 442 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 Q 442 8x48 G.H5 Q 377 G.H5.26