Go - β2-adrenoceptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 13.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 131 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 131 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 F 139 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 F 139 34x51 G.H5 I 343 G.H5.15
Hydrophobic C-term H 390 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term H 390 - H.hbhc M 114 H.hbhc.02
Hydrophobic ICL3 F 240 - G.S6 M 323 G.S6.05
Hydrophobic TM5 I 233 5x72 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 233 5x72 G.h4s6 E 318 G.h4s6.12
Hydrophobic C-term L 381 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term L 381 - G.s4h3 E 237 G.s4h3.10
Polar TM3 A 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 134 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 134 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM6 I 278 6x40 G.H5 L 353 G.H5.25
Hydrophobic C-term H 390 - H.hbhc T 117 H.hbhc.05
Van-der-waals C-term H 390 - H.hbhc T 117 H.hbhc.05
Hydrophobic TM3 I 135 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 135 3x54 G.H5 L 348 G.H5.20
Hydrophobic C-term V 394 - H.HA V 72 H.HA.10
Hydrophobic TM3 I 135 3x54 G.H5 I 344 G.H5.16
Aromatic C-term F 387 - H.HA R 86 H.HA.24
Hydrophobic C-term F 387 - H.HA R 86 H.HA.24
Van-der-waals C-term F 387 - H.HA R 86 H.HA.24
Hydrophobic ICL2 F 139 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM3 I 135 3x54 G.H5 L 353 G.H5.25
Polar C-term D 397 - H.HA Q 68 H.HA.06
Van-der-waals C-term D 397 - H.HA Q 68 H.HA.06
Hydrophobic C-term V 394 - H.HA Q 68 H.HA.06
Van-der-waals C-term V 394 - H.HA Q 68 H.HA.06
Hydrophobic ICL2 P 138 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 138 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL3 F 240 - G.H4 Q 305 G.H4.12
Van-der-waals ICL3 F 240 - G.H4 Q 305 G.H4.12
Polar TM6 K 267 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 267 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 L 275 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 275 6x37 G.H5 L 353 G.H5.25
Hydrophobic C-term Q 391 - H.hbhc T 117 H.hbhc.05
Polar C-term P 395 - H.HA Q 68 H.HA.06
Ionic ICL3 R 260 - G.H4 E 309 G.H4.16
Polar ICL3 R 260 - G.H4 E 309 G.H4.16
Van-der-waals ICL3 R 260 - G.H4 E 309 G.H4.16
Hydrophobic ICL2 F 139 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 F 139 34x51 G.S3 L 195 G.S3.01
Hydrophobic ICL2 Q 142 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 Q 142 34x54 G.hns1 A 31 G.hns1.02
Ionic TM6 K 267 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 267 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 267 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 F 139 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 F 139 34x51 G.H5 T 340 G.H5.12
Ionic TM5 K 232 5x71 G.H5 D 341 G.H5.13
Polar TM5 K 232 5x71 G.H5 D 341 G.H5.13
Hydrophobic TM5 K 232 5x71 G.H5 D 341 G.H5.13
Van-der-waals TM5 K 232 5x71 G.H5 D 341 G.H5.13
Hydrophobic C-term G 392 - H.hbhc T 117 H.hbhc.05
Van-der-waals C-term G 392 - H.hbhc T 117 H.hbhc.05
Hydrophobic ICL2 P 138 34x50 G.H5 I 344 G.H5.16
Polar TM6 T 274 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM6 T 274 6x36 G.H5 G 352 G.H5.24
Van-der-waals TM6 T 274 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM5 Q 229 5x68 G.H5 L 348 G.H5.20
Van-der-waals TM5 Q 229 5x68 G.H5 L 348 G.H5.20
Hydrophobic TM5 A 226 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM6 T 274 6x36 G.H5 L 353 G.H5.25
Polar TM5 Q 229 5x68 G.H5 A 345 G.H5.17
Hydrophobic TM5 Q 229 5x68 G.H5 A 345 G.H5.17
Van-der-waals TM5 Q 229 5x68 G.H5 A 345 G.H5.17
Hydrophobic C-term F 387 - H.HB V 111 H.HB.13
Hydrophobic C-term Y 350 - G.H3 K 258 G.H3.16
Hydrophobic C-term E 379 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term E 379 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term V 388 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term V 388 - H.hbhc M 114 H.hbhc.02
Hydrophobic C-term F 387 - H.HB S 112 H.HB.14
Hydrophobic C-term L 376 - G.H3 M 249 G.H3.07
Hydrophobic C-term E 379 - G.s4h3 L 235 G.s4h3.08
Van-der-waals C-term E 379 - G.s4h3 L 235 G.s4h3.08
Hydrophobic C-term G 389 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term G 389 - H.hbhc M 114 H.hbhc.02
Polar TM5 Q 229 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 Q 229 5x68 G.H5 D 341 G.H5.13
Polar ICL2 S 143 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 S 143 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals TM6 A 271 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM5 Q 229 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 Q 229 5x68 G.H5 I 344 G.H5.16
Hydrophobic ICL3 F 240 - G.H4 A 302 G.H4.08
Van-der-waals ICL3 F 240 - G.H4 A 302 G.H4.08
Hydrophobic TM5 L 230 5x69 G.H5 Y 354 G.H5.26
Hydrophobic TM5 V 222 5x61 G.H5 L 353 G.H5.25
Van-der-waals TM5 V 222 5x61 G.H5 L 353 G.H5.25
Polar ICL3 Q 243 - G.H4 D 299 G.H4.05
Van-der-waals ICL3 Q 243 - G.H4 D 299 G.H4.05