G13 - CT receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Ionic C-term H 444 - G.H2 E 235 G.H2.09
Polar C-term H 444 - G.H2 E 235 G.H2.09
Hydrophobic C-term H 444 - G.H2 E 235 G.H2.09
Van-der-waals C-term H 444 - G.H2 E 235 G.H2.09
Polar TM2 R 180 2x46 G.H5 Q 373 G.H5.22
Van-der-waals TM2 R 180 2x46 G.H5 Q 373 G.H5.22
Hydrophobic TM1 F 173 1x64 G.HN F 4 G.HN.04
Hydrophobic TM3 L 244 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 L 244 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM1 F 172 1x63 G.HN M 1 G.HN.01
Van-der-waals TM1 F 172 1x63 G.HN M 1 G.HN.01
Hydrophobic ICL2 F 253 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 F 253 - G.H5 K 363 G.H5.12
Polar TM3 L 247 3x57 G.H5 N 370 G.H5.19
Hydrophobic TM3 L 247 3x57 G.H5 N 370 G.H5.19
Hydrophobic TM6 K 340 6x37 G.H5 M 375 G.H5.24
Hydrophobic TM6 K 343 6x40 G.H5 M 375 G.H5.24
Hydrophobic TM7 I 390 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 I 390 7x56 G.H5 L 376 G.H5.25
Hydrophobic TM5 I 319 5x57 G.H5 L 374 G.H5.23
Hydrophobic ICL2 F 253 - G.S3 F 218 G.S3.03
Hydrophobic TM3 I 248 3x58 G.H5 L 374 G.H5.23
Hydrophobic ICL2 F 253 - G.S3 V 216 G.S3.01
Hydrophobic ICL2 F 253 - G.H5 V 362 G.H5.11
Polar C-term C 443 - G.H3 R 279 G.H3.16
Van-der-waals C-term C 443 - G.H3 R 279 G.H3.16
Hydrophobic TM6 L 348 6x45 G.H5 L 374 G.H5.23
Polar H8 N 396 8x48 G.H5 L 376 G.H5.25
Van-der-waals H8 N 396 8x48 G.H5 L 376 G.H5.25
Hydrophobic ICL2 V 252 - G.H5 I 366 G.H5.15
Van-der-waals ICL2 V 252 - G.H5 I 366 G.H5.15
Hydrophobic TM7 Y 391 7x57 G.H5 L 376 G.H5.25
Hydrophobic C-term I 440 - G.H3 R 279 G.H3.16
Polar ICL1 R 174 12x48 G.HN F 4 G.HN.04
Hydrophobic ICL1 R 174 12x48 G.HN F 4 G.HN.04
Van-der-waals ICL1 R 174 12x48 G.HN F 4 G.HN.04
Ionic TM5 K 326 5x64 G.H5 D 364 G.H5.13
Polar TM5 K 326 5x64 G.H5 D 364 G.H5.13
Hydrophobic TM5 K 326 5x64 G.H5 D 364 G.H5.13
Van-der-waals TM5 K 326 5x64 G.H5 D 364 G.H5.13
Polar C-term H 444 - G.H2 K 231 G.H2.05
Hydrophobic C-term H 444 - G.H2 K 231 G.H2.05
Van-der-waals C-term H 444 - G.H2 K 231 G.H2.05
Hydrophobic ICL2 V 252 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 V 252 - G.H5 K 363 G.H5.12
Hydrophobic ICL2 K 256 - G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 K 256 - G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 F 253 - G.H5 I 366 G.H5.15
Hydrophobic TM6 I 347 6x44 G.H5 L 376 G.H5.25
Hydrophobic TM5 T 330 5x68 G.H5 H 368 G.H5.17
Hydrophobic TM3 I 248 3x58 G.H5 L 371 G.H5.20
Polar ICL2 K 256 - G.HN T 43 G.HN.52
Hydrophobic ICL2 K 256 - G.HN T 43 G.HN.52
Van-der-waals ICL2 K 256 - G.HN T 43 G.HN.52
Hydrophobic TM5 L 323 5x61 G.H5 L 371 G.H5.20
Hydrophobic TM5 K 326 5x64 G.H5 L 367 G.H5.16
Hydrophobic TM3 I 248 3x58 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 248 3x58 G.H5 L 367 G.H5.16
Hydrophobic C-term I 442 - G.H3 V 280 G.H3.17
Hydrophobic H8 N 395 8x47 G.H5 L 376 G.H5.25
Aromatic C-term H 444 - G.H2 R 232 G.H2.06
Hydrophobic ICL2 V 252 - G.H5 L 367 G.H5.16
Ionic ICL2 E 255 - G.hns1 K 46 G.hns1.02
Polar ICL2 E 255 - G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 E 255 - G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 E 255 - G.hns1 K 46 G.hns1.02
Hydrophobic TM5 V 322 5x60 G.H5 L 367 G.H5.16
Hydrophobic ICL1 R 174 12x48 G.HN P 6 G.HN.06
Van-der-waals ICL1 R 174 12x48 G.HN P 6 G.HN.06
Aromatic ICL2 F 253 - G.H5 F 359 G.H5.08
Hydrophobic ICL2 F 253 - G.H5 F 359 G.H5.08
Van-der-waals ICL2 F 253 - G.H5 F 359 G.H5.08
Polar ICL2 K 256 - G.HN K 42 G.HN.51
Van-der-waals ICL2 K 256 - G.HN K 42 G.HN.51
Aromatic TM1 F 172 1x63 G.HN F 4 G.HN.04
Hydrophobic TM1 F 172 1x63 G.HN F 4 G.HN.04
Van-der-waals TM1 F 172 1x63 G.HN F 4 G.HN.04
Hydrophobic H8 N 396 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 N 396 8x48 G.H5 Q 377 G.H5.26
Ionic C-term E 446 - G.H2 K 231 G.H2.05
Polar C-term E 446 - G.H2 K 231 G.H2.05
Van-der-waals C-term E 446 - G.H2 K 231 G.H2.05
Hydrophobic TM5 K 326 5x64 G.H5 L 371 G.H5.20
Hydrophobic TM6 A 344 6x41 G.H5 M 375 G.H5.24
Van-der-waals TM6 A 344 6x41 G.H5 M 375 G.H5.24