Go - CCR6 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Aromatic TM6 K 248 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 248 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 248 6x29 G.H5 Y 354 G.H5.26
Polar ICL3 Q 245 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 Q 245 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 Q 245 - G.H5 D 341 G.H5.13
Aromatic C-term F 372 - G.H2 R 209 G.H2.04
Hydrophobic C-term F 372 - G.H2 R 209 G.H2.04
Van-der-waals C-term F 372 - G.H2 R 209 G.H2.04
Hydrophobic TM5 A 244 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 A 244 5x68 G.H5 D 341 G.H5.13
Polar TM3 R 143 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 143 3x50 G.H5 C 351 G.H5.23
Aromatic TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 251 6x32 G.H5 Y 354 G.H5.26
Polar ICL3 N 246 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 N 246 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 N 246 - G.H5 D 341 G.H5.13
Polar H8 G 320 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 G 320 8x47 G.H5 G 352 G.H5.24
Hydrophobic ICL2 T 151 34x51 G.S3 L 195 G.S3.01
Polar C-term T 373 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term T 373 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term T 373 - G.s4h3 E 237 G.s4h3.10
Polar TM6 K 248 6x29 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM6 K 248 6x29 G.h4s6 N 316 G.h4s6.10
Van-der-waals TM6 K 248 6x29 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM6 A 252 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM3 R 143 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 143 3x50 G.H5 L 353 G.H5.25
Hydrophobic C-term Q 359 - G.H3 K 258 G.H3.16
Hydrophobic ICL2 T 151 34x51 G.H5 T 340 G.H5.12
Hydrophobic TM6 I 256 6x37 G.H5 L 353 G.H5.25
Polar ICL2 R 157 - G.H5 C 351 G.H5.23
Hydrophobic ICL2 R 157 - G.H5 C 351 G.H5.23
Van-der-waals ICL2 R 157 - G.H5 C 351 G.H5.23
Polar H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Hydrophobic H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 Q 321 8x48 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 248 6x29 G.H5 R 349 G.H5.21
Van-der-waals TM6 K 248 6x29 G.H5 R 349 G.H5.21
Hydrophobic ICL2 T 151 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 S 158 - G.HN I 28 G.HN.52
Hydrophobic C-term F 372 - G.H3 I 254 G.H3.12
Polar ICL3 N 246 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 N 246 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 N 246 - G.h4s6 E 318 G.h4s6.12
Polar C-term T 360 - G.H3 K 258 G.H3.16
Hydrophobic C-term T 360 - G.H3 K 258 G.H3.16
Van-der-waals C-term T 360 - G.H3 K 258 G.H3.16
Polar C-term S 370 - G.H2 R 209 G.H2.04
Van-der-waals C-term S 370 - G.H2 R 209 G.H2.04
Van-der-waals ICL2 F 154 34x54 G.HN I 28 G.HN.52
Hydrophobic H8 G 320 8x47 G.H5 Y 354 G.H5.26
Van-der-waals H8 G 320 8x47 G.H5 Y 354 G.H5.26
Polar C-term T 373 - G.s1h1 G 42 G.s1h1.03
Van-der-waals C-term T 373 - G.s1h1 G 42 G.s1h1.03
Hydrophobic TM5 T 240 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM6 A 252 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 A 252 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM3 I 147 3x54 G.H5 I 344 G.H5.16
Polar ICL2 R 157 - G.H5 N 347 G.H5.19
Hydrophobic C-term F 372 - G.s1h1 G 40 G.s1h1.01
Van-der-waals C-term F 372 - G.s1h1 G 40 G.s1h1.01
Hydrophobic TM3 A 146 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 146 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL3 Q 245 - G.S6 Y 320 G.S6.02
Hydrophobic C-term F 372 - G.H3 L 250 G.H3.08
Van-der-waals C-term F 372 - G.H3 L 250 G.H3.08
Hydrophobic TM3 I 147 3x54 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 241 5x65 G.H5 L 348 G.H5.20
Hydrophobic ICL2 K 152 34x52 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 K 152 34x52 G.s2s3 N 194 G.s2s3.02
Polar TM3 A 146 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 146 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 146 3x53 G.H5 N 347 G.H5.19
Hydrophobic C-term M 374 - G.hfs2 K 181 G.hfs2.04
Van-der-waals C-term M 374 - G.hfs2 K 181 G.hfs2.04
Van-der-waals C-term M 374 - G.hfs2 R 179 G.hfs2.02
Hydrophobic C-term S 370 - G.H3 E 246 G.H3.04
Polar TM6 S 247 6x28 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 S 247 6x28 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 S 247 6x28 G.h4s6 E 318 G.h4s6.12
Hydrophobic C-term F 372 - G.S1 L 39 G.S1.07
Hydrophobic TM5 L 241 5x65 G.H5 I 344 G.H5.16
Hydrophobic ICL2 F 154 34x54 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 F 154 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic TM3 I 147 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 147 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL3 N 246 - G.H5 A 345 G.H5.17
Hydrophobic ICL2 F 154 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 F 154 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 A 150 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 A 150 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 A 150 34x50 G.H5 I 343 G.H5.15
Hydrophobic C-term M 374 - G.hfs2 T 182 G.hfs2.05
Van-der-waals C-term M 374 - G.hfs2 T 182 G.hfs2.05
Hydrophobic ICL2 A 150 34x50 G.H5 T 340 G.H5.12
Polar ICL2 S 153 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 S 153 34x53 G.H5 N 347 G.H5.19
Hydrophobic C-term F 372 - G.s1h1 A 41 G.s1h1.02
Hydrophobic TM6 V 255 6x36 G.H5 L 353 G.H5.25