Go - CB1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.1

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 M 337 6x29 G.H5 I 344 G.H5.16
Hydrophobic ICL2 R 226 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 222 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 222 34x51 G.H5 I 343 G.H5.15
Ionic TM5 R 311 5x75 G.H5 D 337 G.H5.09
Polar TM5 R 311 5x75 G.H5 D 337 G.H5.09
Hydrophobic TM5 R 311 5x75 G.H5 D 337 G.H5.09
Van-der-waals TM5 R 311 5x75 G.H5 D 337 G.H5.09
Hydrophobic C-term V 459 - H.HA V 72 H.HA.10
Van-der-waals C-term V 459 - H.HA V 72 H.HA.10
Polar ICL2 P 221 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 221 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM6 L 341 6x33 G.H5 L 353 G.H5.25
Hydrophobic C-term V 454 - H.HB V 111 H.HB.13
Polar C-term S 452 - H.HA R 86 H.HA.24
Hydrophobic C-term S 452 - H.HA R 86 H.HA.24
Van-der-waals C-term S 452 - H.HA R 86 H.HA.24
Hydrophobic TM5 M 308 5x72 G.H5 D 341 G.H5.13
Polar ICL3 S 316 - G.S6 I 319 G.S6.01
Van-der-waals ICL3 S 316 - G.S6 I 319 G.S6.01
Hydrophobic TM6 L 341 6x33 G.H5 L 348 G.H5.20
Hydrophobic C-term M 461 - H.HA Q 68 H.HA.06
Van-der-waals C-term M 461 - H.HA Q 68 H.HA.06
Polar TM6 T 344 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 344 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM2 S 152 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 308 5x72 G.H5 D 337 G.H5.09
Polar TM5 R 311 5x75 G.H5 Q 333 G.H5.05
Hydrophobic TM5 R 311 5x75 G.H5 Q 333 G.H5.05
Van-der-waals TM5 R 311 5x75 G.H5 Q 333 G.H5.05
Hydrophobic TM3 R 214 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 214 3x50 G.H5 L 353 G.H5.25
Hydrophobic C-term K 458 - G.hfs2 T 183 G.hfs2.06
Hydrophobic C-term V 454 - H.HA R 86 H.HA.24
Hydrophobic TM5 H 304 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 H 304 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM6 L 341 6x33 G.H5 Y 354 G.H5.26
Hydrophobic ICL3 T 313 - G.H5 V 334 G.H5.06
Hydrophobic TM6 M 337 6x29 G.H5 A 345 G.H5.17
Hydrophobic C-term V 454 - H.HA Q 79 H.HA.17
Van-der-waals C-term V 454 - H.HA Q 79 H.HA.17
Ionic TM5 H 304 5x68 G.H5 D 341 G.H5.13
Polar TM5 H 304 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 H 304 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 H 304 5x68 G.H5 D 341 G.H5.13
Hydrophobic C-term M 461 - H.HA D 65 H.HA.03
Van-der-waals C-term M 461 - H.HA D 65 H.HA.03
Ionic ICL3 K 315 - G.H5 D 341 G.H5.13
Polar ICL3 K 315 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 K 315 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 K 315 - G.H5 D 341 G.H5.13
Hydrophobic TM6 I 348 6x40 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 218 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 218 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 L 345 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 345 6x37 G.H5 L 353 G.H5.25
Polar TM2 S 152 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 S 152 2x39 G.H5 G 350 G.H5.22
Hydrophobic TM6 M 337 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 M 337 6x29 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 P 221 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 221 34x50 G.H5 I 344 G.H5.16
Polar ICL3 S 316 - G.H4 E 309 G.H4.16
Hydrophobic ICL3 S 316 - G.H4 E 309 G.H4.16
Van-der-waals ICL3 S 316 - G.H4 E 309 G.H4.16
Hydrophobic C-term V 459 - H.HA Q 68 H.HA.06
Hydrophobic ICL2 Y 224 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 Y 224 34x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 222 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 222 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM5 M 308 5x72 G.H5 A 338 G.H5.10
Polar TM3 R 214 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 214 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 214 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 308 5x72 G.S6 Y 320 G.S6.02
Polar ICL3 Q 314 - G.S6 C 321 G.S6.03
Van-der-waals ICL3 Q 314 - G.S6 C 321 G.S6.03
Aromatic TM6 R 340 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 340 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 340 6x32 G.H5 Y 354 G.H5.26
Polar TM3 S 217 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 S 217 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 S 217 3x53 G.H5 N 347 G.H5.19
Hydrophobic H8 K 402 8x48 G.H5 Y 354 G.H5.26
Hydrophobic ICL3 K 315 - G.S6 I 319 G.S6.01
Van-der-waals ICL3 K 315 - G.S6 I 319 G.S6.01
Hydrophobic C-term A 457 - H.hbhc T 117 H.hbhc.05
Van-der-waals C-term A 457 - H.hbhc T 117 H.hbhc.05
Hydrophobic ICL2 P 221 34x50 G.H5 I 343 G.H5.15
Hydrophobic C-term K 455 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term K 455 - H.hbhc M 114 H.hbhc.02
Polar ICL3 K 315 - G.S6 Y 320 G.S6.02
Hydrophobic ICL3 K 315 - G.S6 Y 320 G.S6.02
Hydrophobic TM6 M 337 6x29 G.H5 L 348 G.H5.20
Van-der-waals TM6 M 337 6x29 G.H5 L 348 G.H5.20
Polar TM3 R 214 3x50 G.H5 G 352 G.H5.24
Hydrophobic C-term M 461 - H.HA Y 69 H.HA.07
Ionic ICL3 K 315 - G.h4s6 E 318 G.h4s6.12
Polar ICL3 K 315 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 K 315 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 K 315 - G.h4s6 E 318 G.h4s6.12
Polar TM3 S 217 3x53 G.H5 C 351 G.H5.23
Hydrophobic H8 S 401 8x47 G.H5 G 352 G.H5.24
Polar H8 K 402 8x48 G.h4s6 N 316 G.h4s6.10
Van-der-waals H8 K 402 8x48 G.h4s6 N 316 G.h4s6.10