Go - GIP receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 L 321 5x61 G.H5 L 348 G.H5.20
Hydrophobic TM2 R 169 2x46 G.H5 C 351 G.H5.23
Hydrophobic TM5 I 317 5x57 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 321 5x61 G.H5 Y 354 G.H5.26
Hydrophobic TM6 L 346 6x45 G.H5 L 353 G.H5.25
Hydrophobic ICL2 G 249 - G.S3 L 195 G.S3.01
Van-der-waals ICL2 G 249 - G.S3 L 195 G.S3.01
Hydrophobic TM3 L 245 3x58 G.H5 L 348 G.H5.20
Van-der-waals TM3 L 245 3x58 G.H5 L 348 G.H5.20
Hydrophobic TM5 K 324 5x64 G.H5 A 345 G.H5.17
Hydrophobic TM5 K 324 5x64 G.H5 I 344 G.H5.16
Hydrophobic C-term L 462 - G.h2s4 E 217 G.h2s4.02
Van-der-waals C-term L 462 - G.h2s4 E 217 G.h2s4.02
Polar TM5 R 328 5x68 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM5 R 328 5x68 G.h4s6 N 316 G.h4s6.10
Van-der-waals TM5 R 328 5x68 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM3 L 245 3x58 G.H5 I 344 G.H5.16
Polar TM5 R 328 5x68 G.h4s6 P 315 G.h4s6.09
Van-der-waals TM5 R 328 5x68 G.h4s6 P 315 G.h4s6.09
Polar TM2 R 169 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM2 R 169 2x46 G.H5 G 350 G.H5.22
Van-der-waals TM2 R 169 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM3 L 245 3x58 G.H5 N 347 G.H5.19
Hydrophobic ICL2 V 248 - G.H5 I 343 G.H5.15
Hydrophobic ICL2 V 248 - G.S3 L 195 G.S3.01
Hydrophobic TM3 L 241 3x54 G.H5 C 351 G.H5.23
Van-der-waals TM3 L 241 3x54 G.H5 C 351 G.H5.23
Polar TM6 R 338 6x37 G.H5 Y 354 G.H5.26
Aromatic TM6 R 338 6x37 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 338 6x37 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 338 6x37 G.H5 Y 354 G.H5.26
Polar TM5 K 324 5x64 G.H5 Y 354 G.H5.26
Hydrophobic TM5 K 324 5x64 G.H5 Y 354 G.H5.26
Polar TM3 L 244 3x57 G.H5 N 347 G.H5.19
Hydrophobic TM3 L 244 3x57 G.H5 N 347 G.H5.19
Van-der-waals TM3 L 244 3x57 G.H5 N 347 G.H5.19
Hydrophobic TM5 K 324 5x64 G.H5 L 348 G.H5.20
Polar TM6 S 342 6x41 G.H5 L 353 G.H5.25
Hydrophobic TM6 S 342 6x41 G.H5 L 353 G.H5.25
Van-der-waals TM6 S 342 6x41 G.H5 L 353 G.H5.25
Ionic TM5 K 324 5x64 G.H5 D 341 G.H5.13
Polar TM5 K 324 5x64 G.H5 D 341 G.H5.13
Hydrophobic TM5 K 324 5x64 G.H5 D 341 G.H5.13
Van-der-waals TM5 K 324 5x64 G.H5 D 341 G.H5.13
Polar ICL2 S 251 - G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 S 251 - G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 S 251 - G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 E 253 - G.HN I 28 G.HN.52
Van-der-waals ICL2 E 253 - G.HN I 28 G.HN.52
Hydrophobic TM3 L 241 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL2 V 248 - G.H5 T 340 G.H5.12
Van-der-waals ICL2 V 248 - G.H5 T 340 G.H5.12
Ionic TM5 R 328 5x68 G.h4s6 E 318 G.h4s6.12
Polar TM5 R 328 5x68 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 R 328 5x68 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 R 328 5x68 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 I 320 5x60 G.H5 I 344 G.H5.16
Hydrophobic TM5 L 325 5x65 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 V 248 - G.H5 I 344 G.H5.16
Polar TM5 R 328 5x68 G.H5 Y 354 G.H5.26
Hydrophobic TM5 R 328 5x68 G.H5 Y 354 G.H5.26
Van-der-waals TM5 R 328 5x68 G.H5 Y 354 G.H5.26