G15 - glucagon receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 23.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 L 249 3x54 G.H5 Y 367 G.H5.19
Van-der-waals TM3 L 249 3x54 G.H5 Y 367 G.H5.19
Hydrophobic TM2 H 177 2x50 G.H5 I 371 G.H5.23
Hydrophobic ICL3 R 336 - G.h4s6 R 338 G.h4s6.20
Van-der-waals ICL3 R 336 - G.h4s6 R 338 G.h4s6.20
Aromatic TM2 R 173 2x46 G.H5 Y 367 G.H5.19
Hydrophobic TM2 R 173 2x46 G.H5 Y 367 G.H5.19
Van-der-waals TM2 R 173 2x46 G.H5 Y 367 G.H5.19
Polar ICL2 T 257 - G.s2s3 Q 200 G.s2s3.01
Hydrophobic ICL2 T 257 - G.s2s3 Q 200 G.s2s3.01
Van-der-waals ICL2 T 257 - G.s2s3 Q 200 G.s2s3.01
Polar ICL2 A 256 - G.S3 T 202 G.S3.01
Hydrophobic ICL2 A 256 - G.S3 T 202 G.S3.01
Van-der-waals ICL2 A 256 - G.S3 T 202 G.S3.01
Hydrophobic TM5 L 328 5x60 G.H5 L 364 G.H5.16
Van-der-waals TM5 L 328 5x60 G.H5 L 364 G.H5.16
Polar TM6 S 350 6x41 G.H5 L 373 G.H5.25
Hydrophobic TM6 S 350 6x41 G.H5 L 373 G.H5.25
Van-der-waals TM6 S 350 6x41 G.H5 L 373 G.H5.25
Polar TM3 E 245 3x50 G.H5 Y 367 G.H5.19
Van-der-waals TM3 E 245 3x50 G.H5 Y 367 G.H5.19
Hydrophobic H8 N 404 8x47 G.H5 N 372 G.H5.24
Hydrophobic TM3 L 252 3x57 G.H5 Y 367 G.H5.19
Hydrophobic ICL2 A 256 - G.H5 F 356 G.H5.08
Van-der-waals ICL2 A 256 - G.H5 F 356 G.H5.08
Aromatic ICL3 R 336 - G.S6 F 340 G.S6.02
Ionic H8 K 405 8x48 G.H5 D 369 G.H5.21
Polar H8 K 405 8x48 G.H5 D 369 G.H5.21
Van-der-waals H8 K 405 8x48 G.H5 D 369 G.H5.21
Hydrophobic TM5 K 332 5x64 G.H5 L 364 G.H5.16
Van-der-waals TM5 K 332 5x64 G.H5 L 364 G.H5.16
Hydrophobic TM3 L 253 3x58 G.H5 L 364 G.H5.16
Van-der-waals TM3 L 253 3x58 G.H5 L 364 G.H5.16
Hydrophobic ICL2 T 257 - G.s2s3 K 201 G.s2s3.02
Van-der-waals ICL2 T 257 - G.s2s3 K 201 G.s2s3.02
Hydrophobic TM6 L 354 6x45 G.H5 L 373 G.H5.25
Van-der-waals TM6 L 354 6x45 G.H5 L 373 G.H5.25
Hydrophobic TM6 T 353 6x44 G.H5 L 373 G.H5.25
Van-der-waals TM6 T 353 6x44 G.H5 L 373 G.H5.25
Hydrophobic TM3 Y 248 3x53 G.H5 Y 367 G.H5.19
Van-der-waals TM3 Y 248 3x53 G.H5 Y 367 G.H5.19
Ionic TM5 K 332 5x64 G.H5 D 361 G.H5.13
Polar TM5 K 332 5x64 G.H5 D 361 G.H5.13
Hydrophobic TM5 K 332 5x64 G.H5 D 361 G.H5.13
Van-der-waals TM5 K 332 5x64 G.H5 D 361 G.H5.13
Hydrophobic TM5 L 329 5x61 G.H5 L 368 G.H5.20
Van-der-waals TM5 L 329 5x61 G.H5 L 368 G.H5.20
Hydrophobic ICL2 T 257 - G.S2 V 199 G.S2.08
Van-der-waals ICL2 T 257 - G.S2 V 199 G.S2.08
Polar TM3 L 253 3x58 G.H5 R 360 G.H5.12
Hydrophobic TM3 L 253 3x58 G.H5 R 360 G.H5.12
Van-der-waals TM3 L 253 3x58 G.H5 R 360 G.H5.12
Polar ICL2 R 261 - G.HN K 37 G.HN.52
Hydrophobic ICL2 R 261 - G.HN K 37 G.HN.52
Van-der-waals ICL2 R 261 - G.HN K 37 G.HN.52
Polar TM3 G 254 3x59 G.H5 R 360 G.H5.12
Polar TM7 L 399 7x56 G.H5 N 372 G.H5.24
Hydrophobic ICL2 T 257 - G.H5 F 356 G.H5.08
Van-der-waals ICL2 T 257 - G.H5 F 356 G.H5.08
Polar TM6 K 349 6x40 G.H5 L 374 G.H5.26
Van-der-waals TM6 T 353 6x44 G.H5 I 371 G.H5.23
Polar H8 N 404 8x47 G.H5 E 370 G.H5.22
Hydrophobic H8 N 404 8x47 G.H5 E 370 G.H5.22
Van-der-waals H8 N 404 8x47 G.H5 E 370 G.H5.22
Hydrophobic ICL2 R 261 - G.HN Q 38 G.HN.53
Hydrophobic TM2 C 171 2x44 G.hns1 R 40 G.hns1.02
Van-der-waals TM2 C 171 2x44 G.hns1 R 40 G.hns1.02
Hydrophobic TM3 L 252 3x57 G.H5 V 363 G.H5.15
Polar ICL2 T 257 - G.S3 T 202 G.S3.01
Hydrophobic ICL2 T 257 - G.S3 T 202 G.S3.01
Van-der-waals ICL2 T 257 - G.S3 T 202 G.S3.01
Hydrophobic ICL2 A 256 - G.H5 R 360 G.H5.12
Van-der-waals ICL2 A 256 - G.H5 R 360 G.H5.12
Polar TM7 L 403 7x60 G.H5 N 372 G.H5.24
Hydrophobic TM7 L 403 7x60 G.H5 N 372 G.H5.24
Van-der-waals TM7 L 403 7x60 G.H5 N 372 G.H5.24
Hydrophobic ICL2 L 258 - G.s2s3 K 201 G.s2s3.02
Polar TM6 K 349 6x40 G.H5 N 372 G.H5.24
Hydrophobic TM6 K 349 6x40 G.H5 N 372 G.H5.24
Van-der-waals TM6 K 349 6x40 G.H5 N 372 G.H5.24
Ionic TM2 R 173 2x46 G.H5 E 370 G.H5.22
Polar TM2 R 173 2x46 G.H5 E 370 G.H5.22
Hydrophobic TM2 R 173 2x46 G.H5 E 370 G.H5.22
Van-der-waals TM2 R 173 2x46 G.H5 E 370 G.H5.22
Hydrophobic TM6 R 346 6x37 G.h4s6 R 335 G.h4s6.17
Hydrophobic TM7 Y 400 7x57 G.H5 I 371 G.H5.23
Van-der-waals TM7 Y 400 7x57 G.H5 I 371 G.H5.23
Polar ICL2 R 261 - G.HN E 34 G.HN.49
Van-der-waals ICL2 R 261 - G.HN E 34 G.HN.49
Polar ICL1 H 170 12x51 G.hns1 R 40 G.hns1.02
Hydrophobic ICL1 H 170 12x51 G.hns1 R 40 G.hns1.02
Van-der-waals ICL1 H 170 12x51 G.hns1 R 40 G.hns1.02