Golf - GPR63 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 74.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.3
PAE mean: 25.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar C-term T 417 - G.hfs2 S 192 G.hfs2.06
Polar C-term Y 410 - G.H2 Q 223 G.H2.09
Hydrophobic C-term Y 410 - G.H2 Q 223 G.H2.09
Van-der-waals C-term Y 410 - G.H2 Q 223 G.H2.09
Aromatic C-term R 416 - G.S2 F 195 G.S2.02
Hydrophobic C-term R 416 - G.S2 F 195 G.S2.02
Van-der-waals C-term R 416 - G.S2 F 195 G.S2.02
Hydrophobic TM2 I 116 2x39 G.H5 L 380 G.H5.25
Van-der-waals TM2 I 116 2x39 G.H5 L 380 G.H5.25
Hydrophobic H8 I 375 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 I 375 8x47 G.H5 E 379 G.H5.24
Polar ICL3 Q 287 - G.hgh4 E 309 G.hgh4.12
Van-der-waals ICL3 Q 287 - G.hgh4 E 309 G.hgh4.12
Hydrophobic TM3 I 183 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 I 183 3x54 G.H5 L 375 G.H5.20
Hydrophobic TM6 I 304 6x25 G.S6 Y 347 G.S6.02
Polar C-term R 402 - G.H3 W 268 G.H3.17
Hydrophobic C-term R 402 - G.H3 W 268 G.H3.17
Van-der-waals C-term R 402 - G.H3 W 268 G.H3.17
Polar C-term H 415 - G.hfs2 S 192 G.hfs2.06
Hydrophobic ICL3 L 285 - G.hgh4 E 309 G.hgh4.12
Van-der-waals ICL3 L 285 - G.hgh4 E 309 G.hgh4.12
Hydrophobic C-term V 418 - H.HA K 84 H.HA.13
Hydrophobic ICL2 R 186 - G.S3 V 204 G.S3.01
Van-der-waals ICL2 R 186 - G.S3 V 204 G.S3.01
Polar C-term T 400 - G.H3 R 267 G.H3.16
Hydrophobic C-term T 400 - G.H3 R 267 G.H3.16
Van-der-waals C-term T 400 - G.H3 R 267 G.H3.16
Hydrophobic TM6 K 309 6x30 G.H5 R 372 G.H5.17
Van-der-waals TM6 K 309 6x30 G.H5 R 372 G.H5.17
Hydrophobic TM4 P 192 4x39 G.HN R 36 G.HN.51
Van-der-waals TM4 P 192 4x39 G.HN R 36 G.HN.51
Ionic C-term H 399 - G.h4s6 D 341 G.h4s6.10
Ionic ICL2 R 186 - G.H5 D 368 G.H5.13
Polar ICL2 R 186 - G.H5 D 368 G.H5.13
Hydrophobic ICL2 R 186 - G.H5 D 368 G.H5.13
Van-der-waals ICL2 R 186 - G.H5 D 368 G.H5.13
Hydrophobic TM2 A 115 2x38 G.H5 L 380 G.H5.25
Polar TM6 D 305 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic TM6 D 305 6x26 G.h4s6 Y 345 G.h4s6.20
Van-der-waals TM6 D 305 6x26 G.h4s6 Y 345 G.h4s6.20
Hydrophobic C-term P 406 - G.hns1 Y 39 G.hns1.01
Van-der-waals C-term P 406 - G.hns1 Y 39 G.hns1.01
Polar C-term R 403 - G.h2s4 N 226 G.h2s4.02
Hydrophobic C-term R 403 - G.h2s4 N 226 G.h2s4.02
Van-der-waals C-term R 403 - G.h2s4 N 226 G.h2s4.02
Polar C-term V 419 - H.HA K 84 H.HA.13
Hydrophobic C-term V 419 - H.HA K 84 H.HA.13
Van-der-waals C-term V 419 - H.HA K 84 H.HA.13
Hydrophobic TM6 F 308 6x29 G.H5 K 376 G.H5.21
Van-der-waals TM6 F 308 6x29 G.H5 K 376 G.H5.21
Hydrophobic ICL1 R 113 12x51 G.HN R 36 G.HN.51
Hydrophobic TM6 K 309 6x30 G.H5 Q 371 G.H5.16
Hydrophobic TM3 I 182 3x53 G.H5 L 375 G.H5.20
Van-der-waals TM3 I 182 3x53 G.H5 L 375 G.H5.20
Polar C-term C 412 - G.S2 I 194 G.S2.01
Hydrophobic C-term C 412 - G.S2 I 194 G.S2.01
Van-der-waals C-term C 412 - G.S2 I 194 G.S2.01
Polar H8 K 377 8x49 G.H5 Q 377 G.H5.22
Van-der-waals H8 K 377 8x49 G.H5 Q 377 G.H5.22
Hydrophobic TM3 R 179 3x50 G.H5 L 381 G.H5.26
Van-der-waals TM3 R 179 3x50 G.H5 L 381 G.H5.26
Ionic H8 K 377 8x49 G.H5 E 379 G.H5.24
Polar H8 K 377 8x49 G.H5 E 379 G.H5.24
Hydrophobic H8 K 377 8x49 G.H5 E 379 G.H5.24
Van-der-waals H8 K 377 8x49 G.H5 E 379 G.H5.24
Hydrophobic C-term I 404 - G.h2s4 D 227 G.h2s4.03
Van-der-waals C-term I 404 - G.h2s4 D 227 G.h2s4.03
Hydrophobic TM5 I 276 5x72 G.H5 R 372 G.H5.17
Van-der-waals TM5 I 276 5x72 G.H5 R 372 G.H5.17
Polar ICL1 R 113 12x51 G.hns1 K 40 G.hns1.02
Hydrophobic ICL1 R 113 12x51 G.hns1 K 40 G.hns1.02
Van-der-waals ICL1 R 113 12x51 G.hns1 K 40 G.hns1.02
Hydrophobic C-term C 412 - G.hfs2 G 193 G.hfs2.07
Van-der-waals C-term C 412 - G.hfs2 G 193 G.hfs2.07
Polar TM6 K 309 6x30 G.H5 D 368 G.H5.13
Polar C-term H 399 - G.h4s6 K 343 G.h4s6.12
Hydrophobic C-term H 399 - G.h4s6 K 343 G.h4s6.12
Van-der-waals C-term H 399 - G.h4s6 K 343 G.h4s6.12
Hydrophobic TM4 N 191 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 N 191 4x38 G.HN L 37 G.HN.52
Polar C-term T 400 - G.H3 W 268 G.H3.17
Hydrophobic C-term T 400 - G.H3 W 268 G.H3.17
Van-der-waals C-term T 400 - G.H3 W 268 G.H3.17
Hydrophobic C-term R 402 - G.h3s5 I 272 G.h3s5.03
Van-der-waals C-term R 402 - G.h3s5 I 272 G.h3s5.03
Van-der-waals TM2 A 115 2x38 G.hns1 K 40 G.hns1.02
Hydrophobic TM4 P 192 4x39 G.hns1 K 40 G.hns1.02
Van-der-waals TM4 P 192 4x39 G.hns1 K 40 G.hns1.02
Polar TM3 R 179 3x50 G.H5 L 380 G.H5.25
Hydrophobic TM3 R 179 3x50 G.H5 L 380 G.H5.25
Van-der-waals TM3 R 179 3x50 G.H5 L 380 G.H5.25
Polar ICL2 R 186 - G.H5 Q 371 G.H5.16
Hydrophobic ICL2 R 186 - G.H5 Q 371 G.H5.16
Hydrophobic TM4 P 192 4x39 G.HN L 37 G.HN.52
Van-der-waals TM4 P 192 4x39 G.HN L 37 G.HN.52
Hydrophobic C-term Y 410 - G.S2 I 194 G.S2.01
Polar ICL3 S 286 - G.hgh4 E 309 G.hgh4.12
Hydrophobic ICL3 S 286 - G.hgh4 E 309 G.hgh4.12
Van-der-waals ICL3 S 286 - G.hgh4 E 309 G.hgh4.12
Hydrophobic TM6 K 309 6x30 G.H5 L 375 G.H5.20
Hydrophobic TM6 A 312 6x33 G.H5 L 381 G.H5.26
Van-der-waals TM6 A 312 6x33 G.H5 L 381 G.H5.26
Hydrophobic C-term H 399 - G.h3s5 R 270 G.h3s5.01
Ionic ICL2 D 188 - G.H5 H 374 G.H5.19
Polar ICL2 D 188 - G.H5 H 374 G.H5.19
Polar ICL1 A 110 12x48 G.HN R 36 G.HN.51
Hydrophobic TM3 R 179 3x50 G.H5 L 375 G.H5.20
Van-der-waals TM3 R 179 3x50 G.H5 L 375 G.H5.20
Polar TM5 N 272 5x68 G.H5 D 368 G.H5.13
Hydrophobic TM4 Y 193 4x40 G.HN L 37 G.HN.52
Van-der-waals TM4 Y 193 4x40 G.HN L 37 G.HN.52
Hydrophobic C-term R 402 - G.H3 L 269 G.H3.18
Van-der-waals C-term R 402 - G.H3 L 269 G.H3.18
Polar C-term I 404 - G.h2s4 N 226 G.h2s4.02
Hydrophobic C-term I 404 - G.h2s4 N 226 G.h2s4.02
Van-der-waals C-term I 404 - G.h2s4 N 226 G.h2s4.02
Van-der-waals TM6 F 313 6x34 G.H5 L 381 G.H5.26
Hydrophobic C-term K 401 - G.H3 W 268 G.H3.17
Van-der-waals C-term K 401 - G.H3 W 268 G.H3.17
Polar C-term R 402 - G.h2s4 F 225 G.h2s4.01
Hydrophobic C-term R 402 - G.h2s4 F 225 G.h2s4.01
Van-der-waals C-term R 402 - G.h2s4 F 225 G.h2s4.01
Polar TM2 S 114 2x37 G.hns1 K 40 G.hns1.02
Hydrophobic TM2 S 114 2x37 G.hns1 K 40 G.hns1.02
Van-der-waals TM2 S 114 2x37 G.hns1 K 40 G.hns1.02
Hydrophobic TM4 Y 193 4x40 G.HN Q 33 G.HN.48
Van-der-waals TM4 Y 193 4x40 G.HN Q 33 G.HN.48
Van-der-waals TM2 N 117 2x40 G.H5 E 379 G.H5.24
Hydrophobic TM6 K 309 6x30 G.H5 L 381 G.H5.26
Polar ICL3 L 296 - G.hgh4 E 309 G.hgh4.12
Van-der-waals ICL3 L 296 - G.hgh4 E 309 G.hgh4.12
Hydrophobic TM6 F 308 6x29 G.H5 L 381 G.H5.26
Van-der-waals TM6 F 308 6x29 G.H5 L 381 G.H5.26
Hydrophobic ICL2 D 188 - G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 D 188 - G.hns1 A 41 G.hns1.03
Polar H8 K 376 8x48 G.H5 E 379 G.H5.24
Polar TM2 S 114 2x37 G.H5 L 380 G.H5.25