Go - H4 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 13.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 T 124 34x55 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 T 124 34x55 G.s2s3 N 194 G.s2s3.02
Ionic ICL1 K 44 12x48 G.HN E 20 G.HN.44
Polar ICL1 K 44 12x48 G.HN E 20 G.HN.44
Hydrophobic TM3 V 116 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 116 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 R 123 34x54 G.S1 V 34 G.S1.02
Polar ICL2 R 123 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 123 34x54 G.hns1 A 31 G.hns1.02
Polar TM3 R 112 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 112 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 112 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 V 120 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM6 L 301 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM6 L 308 6x40 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 308 6x40 G.H5 L 353 G.H5.25
Ionic H8 K 363 8x48 G.h3s5 D 262 G.h3s5.02
Polar TM6 L 301 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 301 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 301 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 S 304 6x36 G.H5 L 353 G.H5.25
Polar ICL3 T 217 - G.H4 D 299 G.H4.05
Hydrophobic TM6 L 305 6x37 G.H5 L 353 G.H5.25
Hydrophobic H8 H 362 8x47 G.H5 C 351 G.H5.23
Polar ICL3 L 216 - G.H4 D 299 G.H4.05
Hydrophobic ICL2 R 123 34x54 G.H5 I 343 G.H5.15
Van-der-waals ICL2 R 123 34x54 G.H5 I 343 G.H5.15
Polar TM6 R 300 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 300 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 300 6x32 G.H5 Y 354 G.H5.26
Polar ICL2 R 123 34x54 G.S1 D 33 G.S1.01
Hydrophobic ICL2 R 123 34x54 G.S1 D 33 G.S1.01
Van-der-waals ICL2 R 123 34x54 G.S1 D 33 G.S1.01
Hydrophobic ICL3 A 218 - G.H4 A 302 G.H4.08
Van-der-waals ICL3 A 218 - G.H4 A 302 G.H4.08
Hydrophobic ICL2 V 120 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 V 120 34x51 G.S3 L 195 G.S3.01
Polar TM6 R 297 6x29 G.h4s6 P 315 G.h4s6.09
Van-der-waals TM6 R 297 6x29 G.h4s6 P 315 G.h4s6.09
Polar H8 H 362 8x47 G.H5 G 350 G.H5.22
Hydrophobic H8 H 362 8x47 G.H5 G 350 G.H5.22
Van-der-waals H8 H 362 8x47 G.H5 G 350 G.H5.22
Hydrophobic ICL2 H 126 - G.HN I 28 G.HN.52
Van-der-waals ICL2 H 126 - G.HN I 28 G.HN.52
Polar TM3 S 115 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 S 115 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 S 115 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 A 119 34x50 G.H5 I 343 G.H5.15
Ionic TM6 R 297 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 297 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 R 297 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 R 297 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 L 201 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 201 5x65 G.H5 L 348 G.H5.20
Polar TM6 R 297 6x29 G.h4s6 K 317 G.h4s6.11
Hydrophobic TM5 R 204 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 R 204 5x68 G.H5 I 344 G.H5.16
Polar TM6 R 297 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 297 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 297 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM3 R 112 3x50 G.H5 L 353 G.H5.25
Ionic TM5 R 204 5x68 G.H5 D 341 G.H5.13
Polar TM5 R 204 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 204 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 R 204 5x68 G.H5 T 340 G.H5.12
Van-der-waals TM5 R 204 5x68 G.H5 T 340 G.H5.12
Hydrophobic ICL3 A 286 - G.H4 A 306 G.H4.13
Hydrophobic TM5 I 197 5x61 G.H5 L 348 G.H5.20
Hydrophobic ICL2 A 119 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 A 119 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM3 V 116 3x54 G.H5 I 344 G.H5.16
Van-der-waals TM3 V 116 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 V 120 34x51 G.H5 T 340 G.H5.12
Polar ICL2 R 123 34x54 G.h2s4 T 220 G.h2s4.05
Hydrophobic ICL2 R 123 34x54 G.h2s4 T 220 G.h2s4.05
Van-der-waals ICL2 R 123 34x54 G.h2s4 T 220 G.h2s4.05
Hydrophobic ICL2 T 124 34x55 G.S3 L 195 G.S3.01
Hydrophobic TM5 L 201 5x65 G.H5 I 344 G.H5.16
Van-der-waals TM5 L 201 5x65 G.H5 I 344 G.H5.16
Polar TM7 C 361 7x56 G.H5 G 352 G.H5.24
Hydrophobic TM7 C 361 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 C 361 7x56 G.H5 G 352 G.H5.24
Hydrophobic ICL2 H 126 - G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 T 124 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 T 124 34x55 G.hns1 K 32 G.hns1.03
Polar H8 K 363 8x48 G.H5 G 350 G.H5.22