Go - motilin receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 79.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 15.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar H8 K 360 8x48 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM6 V 299 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 299 6x36 G.H5 L 353 G.H5.25
Ionic TM6 R 289 6x26 G.H5 D 341 G.H5.13
Polar TM6 R 289 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 R 289 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 R 289 6x26 G.H5 D 341 G.H5.13
Hydrophobic ICL2 L 144 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM6 G 292 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 G 292 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM3 I 140 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 140 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 V 148 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 V 148 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 144 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 144 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM5 L 281 5x72 G.S6 Y 320 G.S6.02
Van-der-waals TM5 L 281 5x72 G.S6 Y 320 G.S6.02
Hydrophobic TM6 T 296 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM5 L 274 5x65 G.H5 I 344 G.H5.16
Polar TM6 G 288 6x25 G.H5 Y 354 G.H5.26
Hydrophobic TM7 I 358 7x56 G.H5 G 352 G.H5.24
Van-der-waals TM7 I 358 7x56 G.H5 G 352 G.H5.24
Hydrophobic ICL2 R 147 34x54 G.H5 I 343 G.H5.15
Polar TM3 R 136 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 136 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 136 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 143 34x50 G.H5 I 343 G.H5.15
Van-der-waals TM5 L 281 5x72 G.H5 D 341 G.H5.13
Hydrophobic ICL3 P 284 - G.H4 E 309 G.H4.16
Van-der-waals ICL3 P 284 - G.H4 E 309 G.H4.16
Hydrophobic ICL2 V 148 34x55 G.HN I 28 G.HN.52
Hydrophobic H8 S 359 8x47 G.H5 G 352 G.H5.24
Polar TM2 T 73 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 73 2x39 G.H5 C 351 G.H5.23
Polar ICL2 R 147 34x54 G.S1 D 33 G.S1.01
Hydrophobic TM4 R 153 4x40 G.HN K 24 G.HN.48
Van-der-waals TM4 R 153 4x40 G.HN K 24 G.HN.48
Polar TM3 A 139 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 139 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 139 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 136 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 136 3x50 G.H5 L 353 G.H5.25
Polar ICL2 R 147 34x54 G.h2s4 T 220 G.h2s4.05
Van-der-waals ICL2 R 147 34x54 G.h2s4 T 220 G.h2s4.05
Hydrophobic TM3 A 139 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM6 R 289 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM2 T 73 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 T 73 2x39 G.H5 G 350 G.H5.22
Hydrophobic TM5 L 274 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM3 I 140 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 143 34x50 G.H5 I 344 G.H5.16
Polar TM6 T 296 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 296 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 296 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 143 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL2 R 147 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 147 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 I 140 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 L 144 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM6 L 300 6x37 G.H5 L 353 G.H5.25