G12 -
Y1 receptor complex model
GPCR CLASS (FAMILY)
SPECIES
G PROTEIN FAMILY
DATE
3D VIEW
Tertiary structure confidence
(pLDDT score) avg.: 82.7
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered
PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 15.0
GPCR - G protein interface interactions
The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle
(Gα residues)
and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid,
hydrophobic - dashed,
ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.
GPCR-G protein backbone (bb) or sidechain (sc):
Structures
0 structures selected.
Sequence Color
Interaction frequency filter (%)
Gα,
Gβ,
Gγ,
GPCR
Interaction cut-off: strict (stick), loose (line)
Interaction type |
GPCR Segment |
AA |
Number |
Generic number |
Gα segment |
AA |
Number |
Generic number |
---|---|---|---|---|---|---|---|---|
Hydrophobic | TM2 | I | 79 | 2x43 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | ICL3 | R | 249 | - | G.h4s6 | P | 345 | G.h4s6.20 |
Van-der-waals | ICL3 | R | 249 | - | G.h4s6 | P | 345 | G.h4s6.20 |
Polar | ICL2 | P | 145 | - | G.H5 | N | 374 | G.H5.19 |
Van-der-waals | ICL2 | P | 145 | - | G.H5 | N | 374 | G.H5.19 |
Van-der-waals | TM5 | R | 237 | 5x64 | G.H5 | K | 367 | G.H5.12 |
Ionic | TM5 | R | 241 | 5x68 | G.H5 | D | 368 | G.H5.13 |
Polar | TM5 | R | 241 | 5x68 | G.H5 | D | 368 | G.H5.13 |
Hydrophobic | TM5 | R | 241 | 5x68 | G.H5 | D | 368 | G.H5.13 |
Van-der-waals | TM5 | R | 241 | 5x68 | G.H5 | D | 368 | G.H5.13 |
Polar | TM6 | R | 254 | 6x26 | G.H5 | Q | 372 | G.H5.17 |
Hydrophobic | TM6 | R | 254 | 6x26 | G.H5 | Q | 372 | G.H5.17 |
Van-der-waals | TM6 | R | 254 | 6x26 | G.H5 | Q | 372 | G.H5.17 |
Hydrophobic | TM6 | M | 264 | 6x36 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | TM6 | M | 264 | 6x36 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | ICL2 | W | 148 | - | G.hns1 | R | 56 | G.hns1.03 |
Hydrophobic | ICL2 | R | 146 | - | G.H5 | I | 370 | G.H5.15 |
Van-der-waals | ICL2 | R | 146 | - | G.H5 | I | 370 | G.H5.15 |
Hydrophobic | TM3 | I | 142 | 3x54 | G.H5 | I | 378 | G.H5.23 |
Hydrophobic | TM6 | I | 261 | 6x33 | G.H5 | L | 375 | G.H5.20 |
Polar | TM6 | N | 251 | 6x23 | G.h4s6 | K | 344 | G.h4s6.19 |
Van-der-waals | TM6 | N | 251 | 6x23 | G.h4s6 | K | 344 | G.h4s6.19 |
Hydrophobic | TM5 | M | 245 | 5x72 | G.H5 | A | 365 | G.H5.10 |
Polar | TM6 | N | 251 | 6x23 | G.h4s6 | R | 342 | G.h4s6.11 |
Van-der-waals | TM6 | N | 251 | 6x23 | G.h4s6 | R | 342 | G.h4s6.11 |
Polar | ICL2 | G | 147 | - | G.hns1 | R | 56 | G.hns1.03 |
Hydrophobic | ICL2 | G | 147 | - | G.hns1 | R | 56 | G.hns1.03 |
Van-der-waals | ICL2 | G | 147 | - | G.hns1 | R | 56 | G.hns1.03 |
Hydrophobic | TM3 | L | 141 | 3x53 | G.H5 | I | 378 | G.H5.23 |
Van-der-waals | TM3 | L | 141 | 3x53 | G.H5 | I | 378 | G.H5.23 |
Polar | TM3 | R | 138 | 3x50 | G.H5 | I | 378 | G.H5.23 |
Hydrophobic | TM3 | R | 138 | 3x50 | G.H5 | I | 378 | G.H5.23 |
Van-der-waals | TM3 | R | 138 | 3x50 | G.H5 | I | 378 | G.H5.23 |
Polar | TM5 | R | 241 | 5x68 | G.H5 | H | 364 | G.H5.09 |
Hydrophobic | ICL3 | R | 249 | - | G.S6 | F | 347 | G.S6.02 |
Ionic | TM6 | R | 254 | 6x26 | G.H5 | D | 368 | G.H5.13 |
Polar | TM6 | R | 254 | 6x26 | G.H5 | D | 368 | G.H5.13 |
Hydrophobic | TM6 | R | 254 | 6x26 | G.H5 | D | 368 | G.H5.13 |
Van-der-waals | TM6 | R | 254 | 6x26 | G.H5 | D | 368 | G.H5.13 |
Polar | TM6 | N | 251 | 6x23 | G.h4s6 | S | 343 | G.h4s6.12 |
Hydrophobic | ICL2 | P | 145 | - | G.H5 | K | 367 | G.H5.12 |
Hydrophobic | TM6 | R | 254 | 6x26 | G.S6 | F | 347 | G.S6.02 |
Van-der-waals | TM6 | R | 254 | 6x26 | G.S6 | F | 347 | G.S6.02 |
Hydrophobic | TM3 | I | 142 | 3x54 | G.H5 | L | 371 | G.H5.16 |
Van-der-waals | TM3 | I | 142 | 3x54 | G.H5 | L | 371 | G.H5.16 |
Polar | H8 | N | 326 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | H8 | N | 326 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | H8 | N | 326 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Polar | TM3 | L | 141 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | TM3 | L | 141 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Van-der-waals | TM3 | L | 141 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | TM5 | L | 238 | 5x65 | G.H5 | L | 371 | G.H5.16 |
Polar | H8 | K | 325 | 8x48 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | H8 | K | 325 | 8x48 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | TM5 | M | 244 | 5x71 | G.H5 | H | 364 | G.H5.09 |
Van-der-waals | TM5 | M | 244 | 5x71 | G.H5 | H | 364 | G.H5.09 |
Hydrophobic | TM5 | M | 245 | 5x72 | G.S6 | F | 347 | G.S6.02 |
Van-der-waals | TM5 | M | 245 | 5x72 | G.S6 | F | 347 | G.S6.02 |
Polar | ICL3 | R | 249 | - | G.h4s6 | S | 343 | G.h4s6.12 |
Van-der-waals | ICL3 | R | 249 | - | G.h4s6 | S | 343 | G.h4s6.12 |
Hydrophobic | TM2 | N | 76 | 2x40 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | TM2 | N | 76 | 2x40 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | TM6 | I | 261 | 6x33 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | TM6 | I | 261 | 6x33 | G.H5 | M | 379 | G.H5.24 |
Hydrophobic | ICL2 | P | 145 | - | G.H5 | I | 370 | G.H5.15 |
Van-der-waals | ICL2 | P | 145 | - | G.H5 | I | 370 | G.H5.15 |
Hydrophobic | TM6 | R | 254 | 6x26 | G.h4s6 | P | 345 | G.h4s6.20 |
Van-der-waals | TM6 | R | 254 | 6x26 | G.h4s6 | P | 345 | G.h4s6.20 |
Polar | H8 | N | 326 | 8x49 | G.H5 | Q | 381 | G.H5.26 |
Hydrophobic | H8 | N | 326 | 8x49 | G.H5 | Q | 381 | G.H5.26 |
Van-der-waals | H8 | N | 326 | 8x49 | G.H5 | Q | 381 | G.H5.26 |
Hydrophobic | TM3 | I | 142 | 3x54 | G.H5 | L | 375 | G.H5.20 |
Van-der-waals | TM3 | I | 142 | 3x54 | G.H5 | L | 375 | G.H5.20 |
Hydrophobic | ICL1 | M | 71 | 12x50 | G.H5 | L | 380 | G.H5.25 |
Aromatic | ICL2 | R | 146 | - | G.H5 | F | 363 | G.H5.08 |
Hydrophobic | ICL2 | R | 146 | - | G.H5 | F | 363 | G.H5.08 |
Van-der-waals | ICL2 | R | 146 | - | G.H5 | F | 363 | G.H5.08 |
Hydrophobic | TM5 | L | 238 | 5x65 | G.H5 | L | 375 | G.H5.20 |
Van-der-waals | TM5 | L | 238 | 5x65 | G.H5 | L | 375 | G.H5.20 |
Polar | TM5 | R | 241 | 5x68 | G.H5 | K | 367 | G.H5.12 |
Hydrophobic | TM5 | R | 241 | 5x68 | G.H5 | K | 367 | G.H5.12 |
Van-der-waals | TM5 | R | 241 | 5x68 | G.H5 | K | 367 | G.H5.12 |
Polar | C-term | T | 354 | - | G.H2 | Q | 236 | G.H2.05 |
Hydrophobic | C-term | T | 354 | - | G.H2 | Q | 236 | G.H2.05 |
Van-der-waals | C-term | T | 354 | - | G.H2 | Q | 236 | G.H2.05 |
Van-der-waals | ICL2 | R | 146 | - | G.S3 | F | 223 | G.S3.03 |
Hydrophobic | ICL2 | R | 146 | - | G.S3 | I | 221 | G.S3.01 |
Van-der-waals | ICL2 | R | 146 | - | G.S3 | I | 221 | G.S3.01 |
Hydrophobic | ICL3 | M | 248 | - | G.H5 | H | 364 | G.H5.09 |
Hydrophobic | ICL3 | M | 248 | - | G.H5 | F | 361 | G.H5.06 |
Van-der-waals | ICL3 | M | 248 | - | G.H5 | F | 361 | G.H5.06 |
Hydrophobic | H8 | N | 324 | 8x47 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | H8 | N | 324 | 8x47 | G.H5 | L | 380 | G.H5.25 |
Polar | ICL3 | R | 249 | - | G.h4s6 | K | 344 | G.h4s6.19 |
Hydrophobic | ICL3 | R | 249 | - | G.h4s6 | K | 344 | G.h4s6.19 |
Van-der-waals | ICL3 | R | 249 | - | G.h4s6 | K | 344 | G.h4s6.19 |
Hydrophobic | ICL2 | R | 146 | - | G.H5 | K | 367 | G.H5.12 |
Van-der-waals | ICL2 | R | 146 | - | G.H5 | K | 367 | G.H5.12 |
Hydrophobic | ICL2 | P | 145 | - | G.H5 | L | 371 | G.H5.16 |
Hydrophobic | H8 | K | 325 | 8x48 | G.H5 | Q | 381 | G.H5.26 |
Polar | ICL2 | R | 149 | - | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | ICL2 | R | 149 | - | G.H5 | N | 374 | G.H5.19 |
Van-der-waals | ICL2 | R | 149 | - | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | ICL3 | M | 248 | - | G.S6 | F | 347 | G.S6.02 |
Van-der-waals | ICL3 | M | 248 | - | G.S6 | F | 347 | G.S6.02 |
Hydrophobic | ICL2 | R | 146 | - | G.S1 | V | 58 | G.S1.02 |
Hydrophobic | TM5 | M | 245 | 5x72 | G.H5 | D | 368 | G.H5.13 |
Van-der-waals | TM5 | M | 245 | 5x72 | G.H5 | D | 368 | G.H5.13 |
Hydrophobic | C-term | I | 350 | - | G.H3 | K | 284 | G.H3.16 |
Van-der-waals | C-term | I | 350 | - | G.H3 | K | 284 | G.H3.16 |
Ionic | C-term | E | 348 | - | G.H3 | K | 284 | G.H3.16 |
Polar | C-term | E | 348 | - | G.H3 | K | 284 | G.H3.16 |
Hydrophobic | C-term | E | 348 | - | G.H3 | K | 284 | G.H3.16 |
Van-der-waals | C-term | E | 348 | - | G.H3 | K | 284 | G.H3.16 |
Hydrophobic | C-term | M | 352 | - | G.H2 | F | 239 | G.H2.08 |
Van-der-waals | C-term | M | 352 | - | G.H2 | F | 239 | G.H2.08 |
Hydrophobic | TM5 | R | 241 | 5x68 | G.H5 | L | 371 | G.H5.16 |
Van-der-waals | TM5 | R | 241 | 5x68 | G.H5 | L | 371 | G.H5.16 |
Polar | ICL3 | M | 248 | - | G.S6 | H | 348 | G.S6.03 |