G13 - κ receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 15.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Ionic TM6 K 265 6x26 G.H5 D 364 G.H5.13
Polar TM6 K 265 6x26 G.H5 D 364 G.H5.13
Van-der-waals TM6 K 265 6x26 G.H5 D 364 G.H5.13
Hydrophobic TM6 N 268 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 N 268 6x29 G.H5 M 375 G.H5.24
Polar TM6 K 265 6x26 G.S6 Y 343 G.S6.02
Van-der-waals TM6 K 265 6x26 G.S6 Y 343 G.S6.02
Polar H8 E 335 8x48 G.H5 L 376 G.H5.25
Hydrophobic TM6 R 271 6x32 G.H5 M 375 G.H5.24
Hydrophobic H8 E 335 8x48 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 V 164 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 V 160 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 160 3x54 G.H5 L 367 G.H5.16
Polar ICL2 P 163 34x50 G.H5 N 370 G.H5.19
Hydrophobic TM3 V 160 3x54 G.H5 L 371 G.H5.20
Hydrophobic TM5 L 253 5x65 G.H5 L 371 G.H5.20
Ionic ICL2 D 168 34x55 G.hns1 R 47 G.hns1.03
Polar ICL2 D 168 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 D 168 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 D 168 34x55 G.hns1 R 47 G.hns1.03
Polar ICL2 R 170 34x57 G.H5 Q 373 G.H5.22
Hydrophobic TM6 K 265 6x26 G.h4s6 P 341 G.h4s6.20
Hydrophobic ICL2 P 163 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 163 34x50 G.H5 I 366 G.H5.15
Polar TM3 R 156 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 156 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 156 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL2 V 164 34x51 G.H5 K 363 G.H5.12
Hydrophobic TM3 V 160 3x54 G.H5 L 374 G.H5.23
Hydrophobic ICL2 L 167 34x54 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 L 167 34x54 G.hns1 K 46 G.hns1.02
Hydrophobic TM4 T 171 4x38 G.hns1 K 46 G.hns1.02
Van-der-waals TM4 T 171 4x38 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 I 272 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 I 272 6x33 G.H5 M 375 G.H5.24
Hydrophobic TM2 I 98 2x43 G.H5 L 376 G.H5.25
Hydrophobic ICL2 P 163 34x50 G.H5 L 367 G.H5.16
Hydrophobic TM5 V 256 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 V 256 5x68 G.H5 L 367 G.H5.16
Hydrophobic TM2 T 94 2x39 G.H5 L 376 G.H5.25
Polar H8 N 336 8x49 G.H5 Q 377 G.H5.26
Hydrophobic H8 N 336 8x49 G.H5 Q 377 G.H5.26
Van-der-waals H8 N 336 8x49 G.H5 Q 377 G.H5.26
Ionic C-term D 366 - G.h4s6 R 335 G.h4s6.09
Hydrophobic TM5 V 256 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 V 256 5x68 G.H5 D 364 G.H5.13
Van-der-waals ICL2 D 168 34x55 G.hns1 K 46 G.hns1.02
Hydrophobic H8 D 334 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 D 334 8x47 G.H5 L 376 G.H5.25
Hydrophobic TM6 L 269 6x30 G.H5 L 371 G.H5.20
Van-der-waals TM6 L 269 6x30 G.H5 L 371 G.H5.20
Polar H8 E 335 8x48 G.H5 M 375 G.H5.24
Hydrophobic ICL2 D 168 34x55 G.HN T 43 G.HN.52
Van-der-waals ICL2 D 168 34x55 G.HN T 43 G.HN.52
Hydrophobic ICL2 V 164 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 V 164 34x51 G.S3 V 216 G.S3.01
Polar H8 N 336 8x49 G.H5 L 376 G.H5.25
Hydrophobic H8 N 336 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 N 336 8x49 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 167 34x54 G.H5 I 366 G.H5.15
Polar TM3 A 159 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 A 159 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 A 159 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM6 I 272 6x33 G.H5 L 371 G.H5.20
Van-der-waals TM6 I 272 6x33 G.H5 L 371 G.H5.20
Hydrophobic ICL2 A 166 34x53 G.H5 N 370 G.H5.19
Van-der-waals ICL2 A 166 34x53 G.H5 N 370 G.H5.19
Hydrophobic ICL2 R 170 34x57 G.H5 L 374 G.H5.23
Van-der-waals ICL2 R 170 34x57 G.H5 L 374 G.H5.23
Hydrophobic TM3 A 159 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 159 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM2 N 95 2x40 G.H5 L 376 G.H5.25
Van-der-waals TM2 N 95 2x40 G.H5 L 376 G.H5.25
Polar ICL2 R 170 34x57 G.H5 N 370 G.H5.19
Aromatic TM6 K 265 6x26 G.H5 H 368 G.H5.17
Hydrophobic TM6 K 265 6x26 G.H5 H 368 G.H5.17