G13 - VPAC1 receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 13.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Ionic ICL3 D 327 - G.H4 R 331 G.H4.16
Polar ICL3 D 327 - G.H4 R 331 G.H4.16
Hydrophobic ICL3 D 327 - G.H4 R 331 G.H4.16
Van-der-waals ICL3 D 327 - G.H4 R 331 G.H4.16
Polar C-term S 435 - G.H3 R 279 G.H3.16
Hydrophobic C-term S 435 - G.H3 R 279 G.H3.16
Van-der-waals C-term S 435 - G.H3 R 279 G.H3.16
Hydrophobic H8 N 392 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 N 392 8x47 G.H5 L 376 G.H5.25
Polar TM3 L 243 3x57 G.H5 N 370 G.H5.19
Hydrophobic TM3 L 243 3x57 G.H5 N 370 G.H5.19
Van-der-waals TM3 L 243 3x57 G.H5 N 370 G.H5.19
Hydrophobic ICL2 F 248 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 F 248 - G.H5 K 363 G.H5.12
Hydrophobic C-term L 437 - G.H3 R 279 G.H3.16
Van-der-waals C-term L 437 - G.H3 R 279 G.H3.16
Hydrophobic ICL2 S 247 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 S 247 - G.H5 K 363 G.H5.12
Polar C-term V 434 - G.H3 R 279 G.H3.16
Hydrophobic C-term V 434 - G.H3 R 279 G.H3.16
Van-der-waals C-term V 434 - G.H3 R 279 G.H3.16
Hydrophobic TM6 L 346 6x45 G.H5 L 374 G.H5.23
Polar C-term S 455 - G.s4h3 R 260 G.s4h3.12
Hydrophobic C-term V 457 - H.HB M 123 H.HB.10
Hydrophobic ICL2 S 247 - G.H5 I 366 G.H5.15
Hydrophobic ICL3 R 329 - G.h4s6 Q 337 G.h4s6.11
Van-der-waals ICL3 R 329 - G.h4s6 Q 337 G.h4s6.11
Polar C-term Q 433 - G.H3 R 279 G.H3.16
Aromatic ICL2 F 248 - G.H5 F 359 G.H5.08
Hydrophobic ICL2 F 248 - G.H5 F 359 G.H5.08
Van-der-waals ICL2 F 248 - G.H5 F 359 G.H5.08
Hydrophobic TM5 L 319 5x61 G.H5 M 375 G.H5.24
Hydrophobic C-term V 457 - H.HA D 101 H.HA.24
Ionic TM5 K 322 5x64 G.H5 D 364 G.H5.13
Polar TM5 K 322 5x64 G.H5 D 364 G.H5.13
Van-der-waals TM5 K 322 5x64 G.H5 D 364 G.H5.13
Hydrophobic TM5 K 322 5x64 G.H5 L 371 G.H5.20
Hydrophobic TM6 S 342 6x41 G.H5 M 375 G.H5.24
Van-der-waals TM6 S 342 6x41 G.H5 M 375 G.H5.24
Hydrophobic TM7 Y 388 7x57 G.H5 L 376 G.H5.25
Hydrophobic TM7 L 387 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 L 387 7x56 G.H5 L 376 G.H5.25
Polar TM3 A 245 3x59 G.H5 K 363 G.H5.12
Hydrophobic TM3 L 244 3x58 G.H5 L 371 G.H5.20
Van-der-waals TM3 L 244 3x58 G.H5 L 371 G.H5.20
Hydrophobic ICL2 F 248 - G.H5 I 366 G.H5.15
Van-der-waals ICL2 F 248 - G.H5 I 366 G.H5.15
Van-der-waals C-term V 457 - H.HA R 97 H.HA.20
Hydrophobic TM5 L 319 5x61 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 319 5x61 G.H5 L 371 G.H5.20
Polar TM2 R 174 2x46 G.H5 Q 373 G.H5.22
Hydrophobic TM2 R 174 2x46 G.H5 Q 373 G.H5.22
Van-der-waals TM2 R 174 2x46 G.H5 Q 373 G.H5.22
Hydrophobic TM5 K 322 5x64 G.H5 L 367 G.H5.16
Van-der-waals TM5 K 322 5x64 G.H5 L 367 G.H5.16
Hydrophobic TM3 L 244 3x58 G.H5 L 367 G.H5.16
Van-der-waals TM3 L 244 3x58 G.H5 L 367 G.H5.16
Hydrophobic TM4 S 250 4x38 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 L 240 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 L 240 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM3 V 246 3x60 G.H5 K 363 G.H5.12
Hydrophobic ICL2 F 248 - G.H5 V 362 G.H5.11
Hydrophobic ICL2 F 248 - G.S1 V 49 G.S1.02
Hydrophobic ICL2 F 248 - G.S3 V 216 G.S3.01
Van-der-waals ICL2 F 248 - G.S3 V 216 G.S3.01