Go - CRF2 receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 12.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 L 209 3x54 G.H5 L 353 G.H5.25
Polar C-term Q 407 - G.H2 R 209 G.H2.04
Hydrophobic C-term Q 407 - G.H2 R 209 G.H2.04
Van-der-waals C-term Q 407 - G.H2 R 209 G.H2.04
Hydrophobic TM5 K 293 5x64 G.H5 L 348 G.H5.20
Hydrophobic ICL2 Y 217 - G.s2s3 K 193 G.s2s3.01
Hydrophobic TM5 L 290 5x61 G.H5 L 348 G.H5.20
Polar C-term A 409 - G.H2 R 206 G.H2.01
Hydrophobic C-term A 409 - G.H2 R 206 G.H2.01
Van-der-waals C-term A 409 - G.H2 R 206 G.H2.01
Polar ICL2 Y 217 - G.H5 T 340 G.H5.12
Hydrophobic ICL2 Y 217 - G.H5 T 340 G.H5.12
Van-der-waals ICL2 Y 217 - G.H5 T 340 G.H5.12
Hydrophobic ICL2 Y 217 - G.S3 L 195 G.S3.01
Van-der-waals ICL2 Y 217 - G.S3 L 195 G.S3.01
Hydrophobic TM5 I 289 5x60 G.H5 I 344 G.H5.16
Hydrophobic ICL2 E 220 - G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 E 220 - G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 T 216 - G.H5 I 343 G.H5.15
Van-der-waals ICL2 T 216 - G.H5 I 343 G.H5.15
Hydrophobic C-term V 411 - G.H2 R 206 G.H2.01
Van-der-waals C-term V 411 - G.H2 R 206 G.H2.01
Hydrophobic TM3 L 209 3x54 G.H5 C 351 G.H5.23
Van-der-waals TM3 L 209 3x54 G.H5 C 351 G.H5.23
Polar C-term S 404 - G.H2 E 208 G.H2.03
Hydrophobic C-term S 404 - G.H2 E 208 G.H2.03
Van-der-waals C-term S 404 - G.H2 E 208 G.H2.03
Ionic TM5 K 293 5x64 G.H5 D 341 G.H5.13
Polar TM5 K 293 5x64 G.H5 D 341 G.H5.13
Hydrophobic TM5 K 293 5x64 G.H5 D 341 G.H5.13
Van-der-waals TM5 K 293 5x64 G.H5 D 341 G.H5.13
Van-der-waals C-term S 396 - G.H3 K 258 G.H3.16
Polar C-term A 409 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term A 409 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term A 409 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term A 410 - G.s4h3 H 236 G.s4h3.09
Hydrophobic TM6 A 311 6x41 G.H5 L 353 G.H5.25
Hydrophobic TM5 K 293 5x64 G.H5 I 344 G.H5.16
Polar C-term T 408 - G.H3 E 246 G.H3.04
Hydrophobic TM5 L 294 5x65 G.H5 Y 354 G.H5.26
Hydrophobic TM5 I 286 5x57 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 213 3x58 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 213 3x58 G.H5 L 348 G.H5.20
Hydrophobic TM6 L 315 6x45 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 315 6x45 G.H5 L 353 G.H5.25
Van-der-waals C-term V 411 - G.hfs2 R 179 G.hfs2.02
Polar C-term A 410 - G.hfs2 R 179 G.hfs2.02
Polar C-term A 410 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term A 410 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term A 410 - G.s4h3 E 237 G.s4h3.10
Van-der-waals ICL2 R 221 - G.s2s3 N 194 G.s2s3.02
Hydrophobic ICL2 T 216 - G.H5 T 340 G.H5.12
Hydrophobic ICL3 S 297 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 S 297 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM2 R 148 2x46 G.H5 C 351 G.H5.23
Polar C-term T 395 - G.H3 K 258 G.H3.16
Hydrophobic C-term T 395 - G.H3 K 258 G.H3.16
Van-der-waals C-term T 395 - G.H3 K 258 G.H3.16
Hydrophobic TM5 K 293 5x64 G.H5 Y 354 G.H5.26
Polar ICL3 S 297 - G.H5 Y 354 G.H5.26
Hydrophobic ICL3 S 297 - G.H5 Y 354 G.H5.26
Van-der-waals ICL3 S 297 - G.H5 Y 354 G.H5.26
Hydrophobic ICL2 T 216 - G.H5 I 344 G.H5.16
Aromatic TM6 K 307 6x37 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 307 6x37 G.H5 Y 354 G.H5.26
Polar C-term Q 407 - G.s1h1 G 40 G.s1h1.01
Hydrophobic TM3 I 213 3x58 G.H5 L 353 G.H5.25
Hydrophobic C-term T 408 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term T 408 - G.s4h3 E 237 G.s4h3.10
Polar TM3 A 212 3x57 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 212 3x57 G.H5 N 347 G.H5.19
Polar TM2 R 148 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM2 R 148 2x46 G.H5 G 350 G.H5.22
Van-der-waals TM2 R 148 2x46 G.H5 G 350 G.H5.22
Hydrophobic TM5 L 290 5x61 G.H5 Y 354 G.H5.26
Polar ICL2 T 216 - G.H5 N 347 G.H5.19